Re: [Rd] wishlist: better error message in R CMD check

From: Gabor Grothendieck <ggrothendieck_at_myway.com>
Date: Sun 07 Nov 2004 - 02:07:09 EST

Liaw, Andy <andy_liaw <at> merck.com> writes:

>
> Gabor,
>
> I guess is that you did not try to run R CMD INSTALL before R CMD check. R
> CMD check will try to install the package first (in pkg.Rcheck), and only if
> that's successful would checks be done.
>
> The installation process will concatenate all R files in R/ to a single file
> and essentially source() that in upon package loading. That's where you
> would see the syntax error. I believe the recommended way is to install the
> package and play with that a bit first, before doing R CMD check. You'd
> find some problems are much easier to find that way (e.g., errors in
> NAMESPACE).
Thanks. Unfortunately if I run R CMD INSTALL I get this:

[...]
  preparing package zoo for lazy loading Error in tools:::.read_description(file) :

        file '/DESCRIPTION' does not exist Execution halted
make: *** [lazyload] Error 1
*** Installation of zoo failed ***

Removing 'C:/PROGRA~1/R/RW2001~1/library/zoo'

I get a similar message if I run R CMD build --binary .

The DESCRIPTION file definitely exists so I assume it to be something else.

If I run run R CMD check then it crashes (that is, I get a popup asking me if I want to send a bug report to Microsoft) at various points depending on which example code in the .Rd files I comment out). If I comment out enough to let it run past them all then I get the following (where I have added the dots at the beginning of each line in this post to circumvent's gmane's top posting filter):

.> ### * runmean
.>
.> flush(stderr()); flush(stdout())
.>
.> ### Name: runmean
.> ### Title: Running Means/Maximums/Medians
.> ### Aliases: runmean runmax runmed
.> ### Keywords: ts
.>
.> ### ** Examples
.>
.> # x.date <- as.POSIXct(paste("2003-", rep(1:4, 4:1), "-", sample(1:28, 10, 
replace = TRUE), sep =
""))
.> # x <- zoo(rnorm(12), x.date)
.>
.> # runmean(x, 5)
.> # runmax(x, 5)
.> # runmed(x, 5)
.>
.>
.>
.> cleanEx(); ..nameEx <- "value"

I assume its the cleanEx line that is the problem but that is not one my lines. I would have tried it with an earlier version of R but I don't want to overwrite the version of the package I have installed on R 2.0.0 since then I will be unable to proceed at all.

I am using Windows XP and R 2.0.1beta .



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https://stat.ethz.ch/mailman/listinfo/r-devel Received on Sun Nov 07 02:14:19 2004

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