[Rd] Core dump during lazy loading of "survival" at installation time (PR#8106)

From: <rbug05_at_kreil.org>
Date: Mon 29 Aug 2005 - 21:07:05 GMT


Full_Name: D Kreil
Version: 2.1.1
OS: HP-UX B.11.23 U ia64 0029870451 unlimited-user license Submission from: (NULL) (62.178.15.60)

I sadly get a core-dump during installation, when it tries to lazyload package survival. Any idea what to do about this?

Best regards,
D.

...
include -fPIC -g -O2 -c survindex2.c -o survindex2.o

        gcc -I/bi/common/src/R-2.1.1/include -I/bi/common/include
-I/usr/local/

include -fPIC -g -O2 -c survindex3.c -o survindex3.o

        gcc -I/bi/common/src/R-2.1.1/include -I/bi/common/include
-I/usr/local/

include -fPIC -g -O2 -c survreg2.c -o survreg2.o

        gcc -I/bi/common/src/R-2.1.1/include -I/bi/common/include
-I/usr/local/

include -fPIC -g -O2 -c survreg3.c -o survreg3.o

        gcc -I/bi/common/src/R-2.1.1/include -I/bi/common/include
-I/usr/local/

include -fPIC -g -O2 -c survreg4.c -o survreg4.o

        gcc -I/bi/common/src/R-2.1.1/include -I/bi/common/include
-I/usr/local/

include -fPIC -g -O2 -c survreg5.c -o survreg5.o

        gcc -shared -fPIC -Wl,-Bsymbolic -L/bi/arch/lib -L/usr/local/lib -o surv
ival.sl agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart.o agmart2.o ags
core.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o chinv3.o cholesky2.o c
holesky3.o chsolve2.o chsolve3.o cox_Rcallback.o coxdetail.o coxfit2.o coxfit5.o
 coxmart.o coxph_wtest.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o pyear
s2.o pyears3.o pystep.o surv_callback.o survdiff2.o survfit2.o survfit3.o survin
dex2.o survindex3.o survreg2.o survreg3.o survreg4.o survreg5.o

** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading

/bi/common/src/R-2.1.1/bin/INSTALL[325]: 3667 Memory fault(coredump) ERROR: lazy loading failed for package 'survival' ** Removing '/bi/common/src/R-2.1.1/library/survival' *** Error exit code 1

Stop.

My configuration is:

CPPFLAGS="-I/bi/common/include -I/usr/local/include" \

    LDFLAGS="-L/bi/arch/lib -L/usr/local/lib" ./configure \     --prefix=/bi/common --exec-prefix=/bi/arch \     --disable-mbcs 2>&1

(it won't compile at all without --disable-mbcs)



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https://stat.ethz.ch/mailman/listinfo/r-devel Received on Tue Aug 30 07:14:16 2005

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