[Rd] update.packages() and loaded packages (PR#8448)

From: <gregor.gorjanc_at_bfro.uni-lj.si>
Date: Wed 28 Dec 2005 - 10:46:56 GMT


Hello!

This is not a severe bug, but an inconsistency in update.packages(). I updated packages and I was not carefull enough to detach loaded packages. The update.packages() warrned me about this, which is fine, but at the end of the update the following warrning was issued (the whole session output can be found at the end of this mail):

...
The downloaded packages are in

         C:\Documents and Settings\GGorjan\Local Settings\Temp\RtmpVwI1ob\downloaded_packages updating HTML package descriptions
Warning message:
number of rows of result

         is not a multiple of vector length (arg 1) in: cbind(1, pkgs, lib)

R> version

          _
platform i386-pc-mingw32

arch     i386
os       mingw32

system i386, mingw32
status Patched
major 2
minor 2.1
year 2005
month 12
day 26
svn rev 36870
language R
-- 
Lep pozdrav / With regards,
     Gregor Gorjanc

----------------------------------------------------------------------
University of Ljubljana     PhD student
Biotechnical Faculty
Zootechnical Department     URI: http://www.bfro.uni-lj.si/MR/ggorjan
Groblje 3                   mail: gregor.gorjanc <at> bfro.uni-lj.si 

SI-1230 Domzale             tel: +386 (0)1 72 17 861
Slovenia, Europe            fax: +386 (0)1 72 17 888 

----------------------------------------------------------------------
"One must learn by doing the thing; for though you think you know it,
  you have no certainty until you try." Sophocles ~ 450 B.C.
----------------------------------------------------------------------

R> update.packages(ask='graphics')
--- Please select a CRAN mirror for use in this session ---
Warning: packages 'gdata, gplots, gtools, R2WinBUGS' are in use and will 
not be installed
trying URL 

'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/coda_0.10-3.zip'
Content type 'application/zip' length 288711 bytes opened URL downloaded 281Kb trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/hdrcde_1.01.zip'
Content type 'application/zip' length 102191 bytes opened URL downloaded 99Kb trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/limma_2.4.4.zip'
Content type 'application/zip' length 1331703 bytes opened URL downloaded 1300Kb trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/locfit_1.5-2.zip'
Content type 'application/zip' length 577663 bytes opened URL downloaded 564Kb trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/Matrix_0.99-3.zip'
Content type 'application/zip' length 2395983 bytes opened URL downloaded 2339Kb trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/vcd_0.9-7.zip'
Content type 'application/zip' length 1278635 bytes opened URL downloaded 1248Kb package 'coda' successfully unpacked and MD5 sums checked package 'hdrcde' successfully unpacked and MD5 sums checked package 'limma' successfully unpacked and MD5 sums checked package 'locfit' successfully unpacked and MD5 sums checked package 'Matrix' successfully unpacked and MD5 sums checked package 'vcd' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Documents and Settings\GGorjan\Local Settings\Temp\RtmpVwI1ob\downloaded_packages updating HTML package descriptions Warning message: number of rows of result is not a multiple of vector length (arg 1) in: cbind(1, pkgs, lib) R> detach(package:gdata) R> detach(package:gplots) R> detach(package:gtools) R> detach(package:R2WinBUGS) R> update.packages(ask='graphics') trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/gdata_2.1.2.zip'
Content type 'application/zip' length 336256 bytes opened URL downloaded 328Kb trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/gplots_2.2.0.zip'
Content type 'application/zip' length 441270 bytes opened URL downloaded 430Kb trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/gtools_2.2.3.zip'
Content type 'application/zip' length 127243 bytes opened URL downloaded 124Kb trying URL
'http://www.fastmirrors.org/cran/bin/windows/contrib/2.2/R2WinBUGS_1.1-0.zip'
Content type 'application/zip' length 1188431 bytes opened URL downloaded 1160Kb package 'gdata' successfully unpacked and MD5 sums checked package 'gplots' successfully unpacked and MD5 sums checked package 'gtools' successfully unpacked and MD5 sums checked package 'R2WinBUGS' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Documents and Settings\GGorjan\Local Settings\Temp\RtmpVwI1ob\downloaded_packages updating HTML package descriptions ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Received on Wed Dec 28 21:52:08 2005

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