Re: [Rd] [R] R compile on AIX 5.2

From: Matthew Beason <mbeason_at_harrahs.com>
Date: Tue 07 Feb 2006 - 00:41:52 GMT


Professor Ripley,

        Following your advice, I am now using an updated version of gcc (4.0.2 to be exact) as well as a true fortran compiler (XL Fortran Compiler v10.1.0.0 from IBM). I am still experiencing difficulty in running "make" after a successful "configure". Any additional insight you could provide would be greatly appreciated. Output of make is as follows:

 Running Make R-2.2.1:

/home/mbeason/work/R-2.2.1/src/main

        /usr/local/bin/gcc -Wl,-brtl -Wl,-bdynamic -Wl,-bE:../../etc/R.exp -Wl,-bM:SRE -L/usr/local/lib -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o

util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a
../nmath/libnmath.a   -lg -lxlf90 -L/usr/lpp/xlf/lib -lxlopt -lxlf
-lxlomp_ser -lm /lib/crt0.o ../extra/zlib/libz.a ../extra/bzip2/libbz2.a
../extra/pcre/libpcre.a -lintl -lreadline -ldl -lm -lc -liconv
ld: 0711-317 ERROR: Undefined symbol: ch2inv
ld: 0711-317 ERROR: Undefined symbol: chol
ld: 0711-317 ERROR: Undefined symbol: cg
ld: 0711-317 ERROR: Undefined symbol: ch
ld: 0711-317 ERROR: Undefined symbol: rg
ld: 0711-317 ERROR: Undefined symbol: rs
ld: 0711-317 ERROR: Undefined symbol: dchdc
ld: 0711-317 ERROR: Undefined symbol: dpbfa
ld: 0711-317 ERROR: Undefined symbol: dpbsl
ld: 0711-317 ERROR: Undefined symbol: dpoco
ld: 0711-317 ERROR: Undefined symbol: dpodi
ld: 0711-317 ERROR: Undefined symbol: dpofa
ld: 0711-317 ERROR: Undefined symbol: dposl
ld: 0711-317 ERROR: Undefined symbol: dqrcf
ld: 0711-317 ERROR: Undefined symbol: dqrdc
ld: 0711-317 ERROR: Undefined symbol: dqrdc2
ld: 0711-317 ERROR: Undefined symbol: dqrls
ld: 0711-317 ERROR: Undefined symbol: dqrsl
ld: 0711-317 ERROR: Undefined symbol: dqrqty
ld: 0711-317 ERROR: Undefined symbol: dqrqy
ld: 0711-317 ERROR: Undefined symbol: dqrrsd
ld: 0711-317 ERROR: Undefined symbol: dqrxb
ld: 0711-317 ERROR: Undefined symbol: dsvdc
ld: 0711-317 ERROR: Undefined symbol: dtrsl
ld: 0711-317 ERROR: Undefined symbol: dtrco
ld: 0711-317 ERROR: Undefined symbol: lminfl
ld: 0711-317 ERROR: Undefined symbol: .zgemm
ld: 0711-317 ERROR: Undefined symbol: .dsyrk
ld: 0711-317 ERROR: Undefined symbol: .dtrsm
ld: 0711-317 ERROR: Undefined symbol: .dcopy
ld: 0711-317 ERROR: Undefined symbol: .dtrsl
ld: 0711-317 ERROR: Undefined symbol: .ddot
ld: 0711-317 ERROR: Undefined symbol: .dnrm2
ld: 0711-317 ERROR: Undefined symbol: .dscal
ld: 0711-317 ERROR: Undefined symbol: .daxpy
ld: 0711-317 ERROR: Undefined symbol: .dpofa
ld: 0711-317 ERROR: Undefined symbol: .intpr0_
ld: 0711-317 ERROR: Undefined symbol: .i_len
ld: 0711-317 ERROR: Undefined symbol: .realp0_
ld: 0711-317 ERROR: Undefined symbol: .dblep0_
ld: 0711-317 ERROR: Undefined symbol: .rexitc_
ld: 0711-317 ERROR: Undefined symbol: .rwarnc_
ld: 0711-317 ERROR: Undefined symbol: .xerbla_
ld: 0711-317 ERROR: Undefined symbol: .d_sign
ld: 0711-317 ERROR: Undefined symbol: .d_cnjg
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
information.
collect2: ld returned 8 exit status
make: The error code from the last command is 1.

Stop.
make: The error code from the last command is 2.

Stop.
make: The error code from the last command is 1.

Stop.
make: The error code from the last command is 1.

Stop.

Running make with R-devel_2006-02-05:

/home/mbeason/work/R-devel/src/appl

        f95 -g -c ch2inv.f -o ch2inv.o
"ch2inv.f", line 1.2: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 2.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 3.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 4.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 5.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 6.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 7.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 7.39: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 8.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 9.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 9.41: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 10.8: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 11.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 12.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 13.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 13.38: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 14.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 15.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 16.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 17.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 18.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 18.32: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 19.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 20.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 21.2: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 22.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 23.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 24.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 25.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 26.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 27.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 28.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 29.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 30.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 30.30: 1515-018 (S) Incorrect character found in source
at line 30 in column 30. Hexadecimal value of character is 7B.
"ch2inv.f", line 30.39: 1515-018 (S) Incorrect character found in source
at line 30 in column 39. Hexadecimal value of character is 7D.
"ch2inv.f", line 31.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 32.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 33.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 34.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 35.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 36.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 37.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 38.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 39.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 40.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 41.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 42.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 43.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 44.0: 1515-010 (S) String is missing a closing
delimiter. Closing delimiter assumed at end of line.
"ch2inv.f", line 44.4: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 45.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 46.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 47.3: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 48.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", 1515-002 (S) END card is missing. One is assumed.
** _main === End of Compilation 1 ===
"ch2inv.f", line 50.7: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 51.6: 1514-050 (S) Specification statement is out of
order. Statement is ignored.
"ch2inv.f", line 52.6: 1514-050 (S) Specification statement is out of
order. Statement is ignored.
"ch2inv.f", line 53.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 54.6: 1514-050 (S) Specification statement is out of
order. Statement is ignored.
"ch2inv.f", line 55.6: 1514-050 (S) Specification statement is out of
order. Statement is ignored.
"ch2inv.f", line 56.1: 1515-019 (S) Syntax is incorrect.
"ch2inv.f", line 63.11: 1515-025 (S) Only a name of a variable, array
element, or character substring is permitted on the left hand side of an assignment statement.
"ch2inv.f", line 66.18: 1516-040 (S) Item has not been defined with the
EXTERNAL or INTRINSIC attribute.
"ch2inv.f", line 70.11: 1515-025 (S) Only a name of a variable, array
element, or character substring is permitted on the left hand side of an assignment statement.
** ch2inv === End of Compilation 2 === 1501-511 Compilation failed for file ch2inv.f. make: The error code from the last command is 1.

Stop.
make: The error code from the last command is 2.

Stop.
make: The error code from the last command is 1.

Stop.
make: The error code from the last command is 1.

Matthew Beason
Analyst - Capacity Planning
Harrah's Entertainment, Inc.
One Harrah's Court, Las Vegas, NV 89119-4312 Office: 702-494-4097
Mobile: 702-622-6902
mbeason@harrahs.com
The information contained in this email may be legally privileged and confidential. It is intended to be read only by the person to whom it is addressed. If you have received this in error or are not the intended recipient, please immediately notify the sender and delete all copies of this message. Thank you.

-----Original Message-----
From: Prof Brian Ripley [mailto:ripley@stats.ox.ac.uk] Sent: Thursday, January 26, 2006 11:35 PM To: Matthew Beason
Cc: r-devel@stat.math.ethz.ch; Ron Kaminski Subject: Re: [R] R compile on AIX 5.2

[Moved to a more appropriate list.]

This is a problem with your f2c. R-2.2.1 (of which you used a beta from more than a month ago) has been compiled using f2c, and I just checked that my f2c (compiled from the current netlib sources) does not produce anything like that or near on line 296.

Why not use a real Fortran compiler? (Your gcc is rather old, as well.)

On Thu, 26 Jan 2006, Matthew Beason wrote:

> Fellow R Enthusiasts..
>
> 	I'm trying to compile R on AIX 5.2 32bit with gcc 3.3.2-5. I've
tried
> both the development bundle R-devel_2006-01-25.tar.gz and the 
> R-beta.tar.gz from about a month ago. In each instance, I'm using the 
> following options prior to running "./configure
--prefix=/usr/local/R":
>
> 	OBJECT_MODE=32
> 	MAIN_LDFLAGS=-Wl,-brtl
> 	SHLIB_LDFLAGS=-Wl,-G
> 	F2C=/usr/local/bin/f2c

But R-devel_2006-01-25 does not support F2C, and its R-admin manual says so quite explicitly!

> The "R-beta" bundle successfully completes the "configure" stage but

> comes up with the following error during "make":
>
> gcc -Wl,-G -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall 
> -Wl,-bI:../../../etc/R.exp -L/usr/local/lib -o internet.so  Rsock.lo 
> internet.lo nanoftp.lo nanohttp.lo sock.lo sockconn.lo 
> /home/mbeason/work/R-beta/src/modules/lapack
> making Lapack.d from Lapack.c
>        /usr/local/bin/f2c  < dlamc.f > c_dlamc.c
>   dlamch:
>   dlamc1:
> Error on line 296: p1_addr:  unknown uname_tag '537090960'
>   dlamc2:
>   dlamc3:
>   dlamc4:
>   dlamc5:
> make: The error code from the last command is 1.

-- 
Brian D. Ripley,                  ripley@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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https://stat.ethz.ch/mailman/listinfo/r-devel Received on Tue Feb 07 11:51:44 2006

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