Re: [Rd] illegal operation in debian (PR#9086)

From: Perez Martin, Agustin <agustin.perez_at_umh.es>
Date: Wed 19 Jul 2006 - 11:39:10 GMT


Well, first I´m going to write the output of gdb:  

      agustin.perez@pitagoras:~$ gdb R core

      GNU gdb 6.3-debian

      Copyright 2004 Free Software Foundation, Inc.

      GDB is free software, covered by the GNU General Public License, and you are

      welcome to change it and/or distribute copies of it under certain conditions.

      Type "show copying" to see the conditions.

      There is absolutely no warranty for GDB. Type "show warranty" for details.

      This GDB was configured as "x86_64-linux"..."/usr/bin/R": not in executable format: No se reconoce el formato del fichero       

      Using host libthread_db library "/lib/libthread_db.so.1".

      Core was generated by `/home/agustin.perez/R-2.3.1/bin/exec/R'.

      Program terminated with signal 4, Illegal instruction.

      #0 0x0000002a9590086f in ?? ()    

And now this is the output of dpkg -l | grep "blas\|lapack"| cut -c-79 :  

      agustin.perez@pitagoras:~$ dpkg -l | grep "blas\|lapack"| cut -c-79

      ii refblas3 1.2-8 Basic Linear Algebra Subroutines 3, shared l

ii refblas3-dev 1.2-8 Basic Linear Algebra Subroutines 3, static l

agustin.perez@pitagoras:~$    

-----Mensaje original-----
De: Dirk Eddelbuettel [mailto:edd@debian.org] Enviado el: miércoles, 19 de julio de 2006 13:20 Para: agustin.perez@umh.es; ripley@stats.ox.ac.uk CC: r-devel@stat.math.ethz.ch; R-bugs@biostat.ku.dk Asunto: Re: [Rd] illegal operation in debian (PR#9086)    

On 19 July 2006 at 12:48, ripley@stats.ox.ac.uk wrote:

| On Wed, 19 Jul 2006, agustin.perez@umh.es wrote:

|

| > Full_Name: Agustin Perez

| > Version: 2.3.1

| > OS: Debian 2.6.8-11-amd64-generic

| > Submission from: (NULL) (193.147.142.6)

| >

| >

| > First of all excuses for my bad use of english and thanks for read my
problem.

| >

| > Well when I do the following comand in R suddenly crashes and exit me
for the

| > enviroment:

| >

| > > a<-matrix(1:13500,450,30)

| > > a%*%t(a)

| >

| > *** caught illegal operation ***

| > address 0x2a9590086f, cause 'illegal operand'

| >

| > Possible actions:

| > 1: abort (with core dump)

| > 2: normal R exit

| > 3: exit R without saving workspace

| > 4: exit R saving workspace

| > Selection: 3

| >

| >

| > I don't know what is the problem.

|

| Quite likely using a BLAS inappropriate for the chip in use.
 

Yes, that is very likely -- the command just worked on my Debian

system. Please show us the result of  

$ dpkg -l | grep "blas\|lapack"| cut -c-79  

Dirk  

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