[Rd] R CMD check for 2.13 rc

From: Dario Strbenac <D.Strbenac_at_garvan.org.au>
Date: Wed, 06 Apr 2011 10:00:08 +1000 (EST)


Hi,

I have a couple of new errors in our package when I check it on R 2.13-rc (r55310). The first one that's mystifying me is

Firstly, it's strange to see NOTE and Error being used interchangeably here. The package is being developed by a couple of us, so I checked that there were no calls to normalizePath in any of our code, and there aren't:

darstr_at_clark-lab:~/Repitools_github/pkg$ grep -r normalizePath .

./Repitools.Rcheck/00check.log:Error : object normalizePath is not exported by 'namespace:utils'
./Repitools.Rcheck/00check.log:Error : object normalizePath is not exported by 'namespace:utils'
./Repitools.Rcheck/tests/tests.Rout.fail:Error : object 'normlizePath' is not exported by 'namespace:utils'

I haven't got a clue where to look next.

My second concern is that I have used the code:

setOldClass("AffymetrixCelSet")

to make an S3 class be S4 dispatchable on. But R 2.13 wants me to document this class that I don't own:

Is this truly necessary ?



Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia

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