Re: [Rd] How to list package dependency on a Bioconductor package?

From: Uwe Ligges <ligges_at_statistik.tu-dortmund.de>
Date: Tue, 03 Jan 2012 13:42:39 +0100

On 03.01.2012 00:16, Steven Lund wrote:
> I know others have asked similar questions to the R developers, but I
> could not find the solution to this question. Please forgive me if I
> have missed a crucial point in a previous post.
>
> I would like to submit a package to CRAN that depends on the
> bioconductor package "edgeR". Listing "edgeR" under the Depends or
> Imports lines in the DESCRIPTION file for my package causes an error
> when running the `R CMD check' command on my package's 'tar.gz' file:
>
> * checking package dependencies ... ERROR
> Package required but not available: ‚edgeR‚
>
> Is there documentation or an example anywhere of how to handle
> dependencies on Bioconductor packages when creating a package for
> CRAN?
Same as for CRAN packages. The CRAN check farm will automatically install the dependency from BioConductor if available for the corresponding platform / R version.

Uwe Ligges

>
> Thank you!
>
> -Steve
>
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> R-devel_at_r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel



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