[Rd] R-devel does not compile under FreeBSD-7.0 CURRENT

From: Rainer Hurling <rhurlin_at_gwdg.de>
Date: Wed 29 Nov 2006 - 21:05:08 GMT


I am not able to compile R-devel 2006-11-28 under FreeBSD-7.0 CURRENT. After running ./configure script 'make' stops with the following error message:



#make

gcc -I. -I./src/include -I./src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c -o .m.o
gcc: No input files specified
*** Error code 1

Stop in /usr/local/R-devel.
#


I attached configure messages. If wanted I can send complete config.log (460 kByte).

Are their any ideas about what is going wrong? If I could help with more information or with testing, please let me know.

Thanks,
Rainer Hurling

#./configure

checking build system type... i386-unknown-freebsd7.0 checking host system type... i386-unknown-freebsd7.0 loading site script './config.site'
loading build specific script './config.site' checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes

checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... no
checking for mawk... no
checking for nawk... nawk

checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E
checking whether ln -s works... yes
checking for ranlib... ranlib
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/local/bin/ginstall -c
checking for sed... /usr/bin/sed
checking for less... /usr/bin/less
checking for perl... /usr/local/bin/perl
checking whether perl version is at least 5.004... yes
checking for dvips... /usr/local/bin/dvips
checking for tex... /usr/local/bin/tex
checking for latex... /usr/local/bin/latex
checking for makeindex... /usr/local/bin/makeindex
checking for pdftex... /usr/local/bin/pdftex
checking for pdflatex... /usr/local/bin/pdflatex
checking for makeinfo... /usr/local/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for unzip... /usr/local/bin/unzip
checking for zip... /usr/local/bin/zip
checking for gzip... /usr/bin/gzip
checking for firefox... /usr/local/bin/firefox
using default browser ... /usr/local/bin/firefox checking for acroread... /usr/X11R6/bin/acroread checking for gcc... gcc
checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables...
checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking whether gcc needs -traditional... no
checking how to run the C preprocessor... gcc -E
checking for g77... no
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checking for ifc... no
checking for efc... no

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checking for lf95... no
checking for gfortran... no
checking for ftn... no
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checking for f90... no
checking for xlf90... no
checking for pgf90... no

checking for pghpf... no
checking for epcf90... no
checking for g77... no
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checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... no checking whether f77 accepts -fvisibility... no checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... yes checking whether gcc accepts -g... yes
checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking how to recognise dependent libraries... pass_all checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes

checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking the maximum length of command line arguments... 65536 checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for ranlib... (cached) ranlib
checking for strip... strip

checking if gcc static flag works... yes checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... freebsd7.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool
appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC
checking if g++ PIC flag -fPIC works... yes
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd7.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd7.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... no
checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes
checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
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checking for dl.h... no
checking for dlfcn.h... (cached) yes
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checking floatingpoint.h usability... yes
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checking grp.h usability... yes
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checking limits.h usability... yes
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checking locale.h usability... yes
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checking netdb.h usability... yes
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checking netinet/in.h usability... yes
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checking pwd.h usability... yes
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checking for pwd.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
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checking sys/socket.h usability... yes
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checking for sys/stat.h... (cached) yes
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checking sys/time.h usability... yes
checking sys/time.h presence... yes
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checking sys/utsname.h usability... yes
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checking for sys/utsname.h... yes
checking time.h usability... yes
checking time.h presence... yes

checking for time.h... yes
checking for unistd.h... (cached) yes
checking errno.h usability... yes
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checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes

checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... no checking return type of signal handlers... void checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
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checking for uintptr_t... yes

checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... -std=gnu99 checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 checking for inline... inline
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 4
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checking size of long long... 8
checking for double... yes
checking size of double... 8
checking for long double... yes
checking size of long double... 12
checking whether we can compute C Make dependencies... yes, using gcc -std=gnu99 -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77... -L/usr/local/lib -L/usr/lib -lg2c -lm checking how to get verbose linking output from gcc -std=gnu99... -v checking for C libraries of gcc -std=gnu99... -L/usr/local/lib -L/usr/lib checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, extra underscore checking whether f77 appends underscores to external names... yes checking whether f77 appends extra underscores to external names... yes checking whether mixed C/Fortran code can be run... yes
checking whether f77 and gcc -std=gnu99 agree on int and double... yes
checking whether f77 and gcc -std=gnu99 agree on double complex... yes
checking whether g++ accepts -M for generating dependencies... yes
checking whether C runtime needs -D__NO_MATH_INLINES... yes checking for xmkmf... /usr/X11R6/bin/xmkmf checking for off_t... yes
checking for working alloca.h... no
checking for alloca... yes
checking whether alloca is declared... no
checking for fseeko... yes
checking for ftello... yes
checking for isblank... yes
checking for matherr... no

checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log2 exists and is declared... no
checking whether log10 exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether va_copy exists and is declared... yes checking whether __va_copy exists and is declared... no
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether system exists and is declared... yes
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checking whether strcoll exists and is declared... yes
checking whether strerror exists and is declared... yes
checking whether getrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether gettimeofday exists and is declared... yes
checking whether times exists and is declared... yes
checking whether time exists and is declared... yes
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checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether symlink exists and is declared... yes
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checking for putenv... yes
checking whether putenv is declared... yes checking for vasprintf... yes
checking whether vasprintf is declared... yes checking for realpath... yes
checking whether realpath is declared... yes checking for finite... yes
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checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking for nl_langinfo and CODESET... yes
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checking for library containing connect... none required
checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for __setfpucw... no
checking for working calloc... yes
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checking whether ftell works correctly on files opened for append... yes checking whether C99 double complex is supported... checking complex.h usability... yes
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checking whether cexp exists and is declared... no
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checking for cblas_cdotu_sub in vecLib framework... no checking iconv.h usability... yes
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configure: WARNING: X11/Intrinsic.h: accepted by the compiler, rejected by the preprocessor!
configure: WARNING: X11/Intrinsic.h: proceeding with the compiler's result
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checking for XtToolkitInitialize in -lXt... yes using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... yes
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configure: WARNING: X11/Xmu/Atoms.h: accepted by the compiler, rejected by the preprocessor!
configure: WARNING: X11/Xmu/Atoms.h: proceeding with the compiler's result
checking for X11/Xmu/Atoms.h... yes
checking for XmuInternAtom in -lXmu... yes checking for CFStringGetSystemEncoding in CoreFoundation framework... no checking for tclConfig.sh... no
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checking whether Java compiler works... yes checking whether Java interpreter works... yes checking for Java environment... in /usr/local/diablo-jdk1.5.0/jre checking for gfortran... no
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checking whether we are using the GNU Fortran compiler... yes checking whether f77 accepts -g... yes
checking for Fortran flag to compile .f90 files... unknown checking for Fortran flag to compile .f95 files... unknown
checking for recommended packages... yes
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checking whether make sets $(MAKE)... yes
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R is now configured for i386-unknown-freebsd7.0

  Source directory: .
  Installation directory: /usr/local

  C compiler:                gcc -std=gnu99 -D__NO_MATH_INLINES -g -O2
  Fortran 77 compiler:       f77  -g -O2

  C++ compiler:              g++  -g -O2
  Fortran 90/95 compiler:    f77 -g -O2
  Obj-C compiler:            gcc -g -O2

  Interfaces supported:      X11, tcltk
  External libraries:        readline
  Additional capabilities:   PNG, JPEG, iconv, MBCS, NLS
  Options enabled:           shared BLAS, R profiling, Java

  Recommended packages:      yes


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https://stat.ethz.ch/mailman/listinfo/r-devel Received on Thu Nov 30 08:12:17 2006

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