Re: [Rd] [R] Suspected memory leak with R v.2.5.x and large matrices with dimnames set

From: Seth Falcon <sfalcon_at_fhcrc.org>
Date: Sat, 18 Aug 2007 12:21:00 -0700

Hi Peter,

Peter Waltman <waltman_at_cs.nyu.edu> writes:
> Admittedly, this may not be the most sophisticated memory profiling
> performed, but when using unix's top command, I'm noticing a notable
> memory leak when using R with a large matrix that has dimnames
> set.

I'm not sure I understand what you are reporting. One thing to keep in mind is that how memory released by R is handled is OS dependent and one will often observe that after R frees some memory, the OS does not report that amount as now free.

Is what you are observing preventing you from getting things done, or just a concern that there is a leak that needs fixing? It is worth noting that the internal handling of character vectors has changed in R-devel and so IMO testing there would make sense before persuing this further, I suspect your results will be different.

+ seth

-- 
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
BioC: http://bioconductor.org/
Blog: http://userprimary.net/user/

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