Re: [Rd] packages MANOR, qvalue, and tkWidgets fail install on Fedora 7 with latest R-beta build

From: Martin Morgan <mtmorgan_at_fhcrc.org>
Date: Wed, 19 Sep 2007 20:21:15 -0700

Hi Mark --

sessionInfo and the warning messages are not enough here. Try to install one of the failing packages and provide the complete transcript of the process.

Consider sending this to the Bioconductor mailing lists (bioc-devel, in particular, since these packages are in the development branch).

Martin

Mark W Kimpel <mkimpel_at_iupui.edu> writes:

> Had some packages fail install so I updated to today's R-beta release.
> On updating packages the following packages still fail. sessionInfo
> follows. Mark
>
> Warning messages:
> 1: In install.packages(update[instlib == l, "Package"], l, contriburl =
> contriburl, :
> installation of package 'MANOR' had non-zero exit status
> 2: In install.packages(update[instlib == l, "Package"], l, contriburl =
> contriburl, :
> installation of package 'qvalue' had non-zero exit status
> 3: In install.packages(update[instlib == l, "Package"], l, contriburl =
> contriburl, :
> installation of package 'tkWidgets' had non-zero exit status
> > sessionInfo()
> R version 2.6.0 beta (2007-09-18 r42895)
> i686-pc-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] tools stats graphics grDevices utils datasets methods
> [8] base
>
> other attached packages:
> [1] limma_2.11.13 affy_1.15.9 preprocessCore_0.99.18
> [4] affyio_1.5.11 Biobase_1.15.33 graph_1.15.20
>
> loaded via a namespace (and not attached):
> [1] cluster_1.11.8 rcompgen_0.1-15
> --
>
> ---
>
> Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry
> Indiana University School of Medicine
>
> 15032 Hunter Court, Westfield, IN 46074
>
> (317) 490-5129 Work, & Mobile & VoiceMail
> (317) 663-0513 Home (no voice mail please)
>
> ______________________________________________
> R-devel_at_r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

-- 
Martin Morgan
Bioconductor / Computational Biology
http://bioconductor.org

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Received on Thu 20 Sep 2007 - 03:24:59 GMT

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