Re: [Rd] R 2.6.0 make check fails on SGI origin 350 and

From: kamil Marcinkowski <kamil_at_ualberta.ca>
Date: Tue, 6 Nov 2007 17:02:56 -0700

Hello Prof Brian Ripley and list

There is no "d-p-q-r-tests.Rout" file, the following files do exists and are being sent as attachments:
./tests/d-p-q-r-tests.R , ./tests/d-p-q-r-tests.Rout.save , ./tests/d- p-q-r-tests.Rout.fail .

Cheers,

Kamil

Kamil Marcinkowski                   Westgrid System Administrator
kamil_at_ualberta.ca                     University of Alberta site
  Tel.780 492-0354                     Research Computing Support
Fax.780 492-1729                     Academic ICT
Edmonton, Alberta, CANADA University of Alberta

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On 6-Nov-07, at 4:46 PM, Prof Brian Ripley wrote:

> We need to see the d-p-q-r-tests.Rout file, and perhaps ask for some
> more runs (unfortunately that line number is after massaging). Can
> you make it available to us? Or at least a portion containing the
> quoted line (which should only occur once)?
>
> On Tue, 6 Nov 2007, kamil Marcinkowski wrote:
>
>> Hello
>>
>> I am trying to install R 2.6.0 on a SGI Origin 350 running IRIX 6.5
>> 6.5.28f
>>
>> R was configured with the following options:
>>
>>> --x-includes=/usr/include/X11
>>> --x-libraries=/usr/lib/X11
>>> --includedir=/usr/freeware/include
>>> --includedir=/usr/freeware/lib32
>>> --includedir=/usr/freeware/lib64
>>> --with-readline=no
>>> --with-iconv=no
>>> CC=cc
>>
>>
>> gmake complied successfully, however gmake check failed on d-p-q-r-
>> tests.R .
>>
>>> running code in 'd-p-q-r-tests.R' ... OK
>>> comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ...
>>> 959c959
>>> < [1] "Mean scaled difference: NaN"
>>> ---
>>>> [1] TRUE
>>> gmake[3]: *** [d-p-q-r-tests.Rout] Error 1
>>> gmake[3]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
>>> gmake[2]: *** [test-Specific] Error 2
>>> gmake[2]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
>>> gmake[1]: *** [test-all-basics] Error 1
>>> gmake[1]: Leaving directory `/usr/global/R-build/R-2.6.0/tests'
>>> gmake: *** [check] Error 2
>>
>>
>> Any ideas would be appreciated.
>>
>> Cheers,
>>
>> Kamil
>>
>> Kamil Marcinkowski Westgrid System Administrator
>> kamil_at_ualberta.ca University of Alberta site
>> Tel.780 492-0354 Research Computing Support
>> Fax.780 492-1729 Academic ICT
>> Edmonton, Alberta, CANADA University of Alberta
>>
>>
>> "This communication is intended for the use of the recipient to which
>> it is
>> addressed, and may contain confidential, personal, and/or privileged
>> information. Please contact us immediately if you are not the
>> intended
>> recipient of this communication. If you are not the intended
>> recipient of
>> this communication, do not copy, distribute, or take action on it.
>> Any
>> communication received in error, or subsequent reply, should be
>> deleted or
>> destroyed."
>>
>>
>>
>>
>> [[alternative HTML version deleted]]
>>
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>
> --
> Brian D. Ripley, ripley_at_stats.ox.ac.uk
> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
>



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