[Rd] rc note, etc

From: Paul Gilbert <pgilbert_at_bank-banque-canada.ca>
Date: Thu, 21 Aug 2008 15:33:15 -0400


Are the messages below to be expected from make check-all ?

using the rc today, Aug 21, on
Red Hat Enterprise Linux AS release 4 (Nahant Update 4) Kernel 2.6.9-42.0.8.ELsmp on an x86_64

Paul



....
checking package 'utils'
....
* checking R code for possible problems ... NOTE install.packages: no visible global function definition for

   ‘.install.winbinary’
install.packages: no visible global function definition for

   ‘.install.macbinary’

....
checking package 'stats'
....
* checking R code for possible problems ... NOTE glm.fit: no visible binding for global variable ‘n’

* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking tests ...

make[3]: Entering directory
`/home/mfa/gilp/toolchain/R/src/R-rc/tests/stats.Rcheck/tests'

   Running 'nafns.R'
   Running 'nls.R'
   Comparing 'nls.Rout' to 'nls.Rout.save' ...134c134 < Achieved convergence tolerance: 2.75e-06 ---
> Achieved convergence tolerance: 2.74e-06
145c145
< 3: 0.00060639084: 0.00517051 0.999153 ---
> 3: 0.00060639084: 0.00517052 0.999153
214c214
< Achieved convergence tolerance: 1.04e-07 ---
> Achieved convergence tolerance: 1.34e-07
249c249
< Achieved convergence tolerance: 1.73e-07 ---
> Achieved convergence tolerance: 1.29e-07
288c288
< Achieved convergence tolerance: 3.73e-08 ---
> Achieved convergence tolerance: 8.48e-09
382c382
< Achieved convergence tolerance: 2.80e-07 ---
> Achieved convergence tolerance: 2.81e-07
430c430
< Achieved convergence tolerance: 3.16e-06 ---
> Achieved convergence tolerance: 3.43e-06
487c487
< 11 3.40458 22.42470 1.38476
---
> 11 3.40458 22.42471 1.38476

497,498c497,498
< 7 3.89865 23.13401 1.79455
< 8 4.52605 166.09148 2.20381
---
> 7 3.89865 23.13399 1.79455
> 8 4.52605 166.09149 2.20381

611c611
< Achieved convergence tolerance: 7.17e-07 ---
> Achieved convergence tolerance: 7.45e-07
647c647
< Achieved convergence tolerance: 2.08e-06 ---
> Achieved convergence tolerance: 1.98e-06
  OK

....
checking package 'methods'
....
* checking R code for possible problems ... NOTE browseAll: no visible binding for global variable ‘.BrowserStack’

..dataPartReplace2: no visible binding for global variable ‘THISCLASS’
...First.lib: no visible binding for global variable ‘.possibleExtends’
...First.lib: no visible binding for global variable ‘.makeGeneric’
...First.lib: no visible binding for global variable

   ‘.newClassRepresentation’
...First.lib: no visible binding for global variable

   ‘..mergeClassDefSlots’
..makeBasicFuns: no visible global function definition for

   ‘.addBasicGeneric’
..makeBasicFuns: no visible binding for global variable

   ‘.addBasicGeneric’
..oldTestFun: no visible binding for global variable ‘CLASS’ selectMethod: no visible binding for global variable ‘.SelectMethodOn’ ....
checking package 'grid'

....
* checking R code for possible problems ... NOTE

wrap.down: no visible binding for global variable ‘path’
wrap.pop: no visible binding for global variable ‘n’
wrap.up: no visible binding for global variable ‘n’
wrap.viewport: no visible binding for global variable ‘vp’
....
checking bundle 'VR'
....
** checking R code for possible problems ... NOTE glmmPQL: no visible binding for global variable ‘wts’ negative.binomial : variance: no visible binding for global variable

   ‘.Theta’
negative.binomial : dev.resids: no visible binding for global variable

   ‘.Theta’
negative.binomial : aic: no visible binding for global variable

   ‘.Theta’

neg.bin : variance: no visible binding for global variable ‘.Theta’
neg.bin : dev.resids: no visible binding for global variable ‘.Theta’
neg.bin : aic: no visible binding for global variable ‘.Theta’
** checking Rd files ... OK

La version française suit le texte anglais.


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