[Rd] R_CHAR + 21 (memory.c:2573) in crash report...

From: Jeff Hamann <jeff.hamann_at_forestinformatics.com>
Date: Fri, 27 Feb 2009 15:36:16 -0800


I'm not sure if this is the best subject line, and I apologize in advanced for the cross-posting, but I've been trying to get past a piece of code for two days now, and seem to have narrowed where a show stopping crash is occurring...

I keep getting:

psql:../sql/schedpak.sql:257: server closed the connection unexpectedly

	This probably means the server terminated abnormally
	before or while processing the request.
psql:../sql/schedpak.sql:257: connection to server was lost

Process SQL exited abnormally with code 2

when I return from a plr function:

select * from pareto_set_as_gpx( 1, 20678 );

I'm a little handicapped as I'm not used to debugging by trial and error, and just don't know what else I can do. I've attached a crash report, and don't know if this is a problem with the PL/R module, the libR.dylib module, or something I'm doing incorrectly. I've been using this code for months now, and added another column to the type definition, which seemed to break something.

Does the following indicate that libR.dylib is causing this crash?

Thread 0 Crashed:

0   libR.dylib                    	0x015d4a35 R_CHAR + 21 (memory.c:2573)
1   plr.so                        	0x007ce329 get_frame_tuplestore + 1001
2   plr.so                        	0x007ce854 r_get_pg + 356
3   plr.so                        	0x007cc2ab plr_call_handler + 363
4   postgres                      	0x0010483a
ExecMakeTableFunctionResult + 314
5   postgres                      	0x00112dc0 FunctionNext + 128
6   postgres                      	0x00107325 ExecScan + 357
7   postgres                      	0x001129e2 ExecFunctionScan + 34
8   postgres                      	0x000ffc2f ExecProcNode + 447
9   postgres                      	0x000fd9eb ExecutorRun + 827
10  postgres                      	0x001abf5f PortalRunSelect + 655
11  postgres                      	0x001acd41 PortalRun + 433
12  postgres                      	0x001a7b45 exec_simple_query + 661
13  postgres                      	0x001a97ff PostgresMain + 4751
14  postgres                      	0x00178774 ServerLoop + 2964
15  postgres                      	0x00179798 PostmasterMain + 2760
16  postgres                      	0x0012329b main + 1227
17  postgres                      	0x00001676 start + 54



Process: postgres [26719] Path: /usr/local/pgsql/bin/postgres Identifier: postgres Version: ??? (???) Code Type: X86 (Native)


Parent Process: postgres [283]
Date/Time:       2009-02-27 15:14:18.098 -0800
OS Version:      Mac OS X 10.5.6 (9G55)

Report Version: 6

Exception Type: EXC_BAD_ACCESS (SIGBUS)

Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread: 0

Thread 0 Crashed:

0   libR.dylib                    	0x0162ea35 R_CHAR + 21 (memory.c:2573)
1   plr.so                        	0x0155d329 get_frame_tuplestore + 1001
2   plr.so                        	0x0155d854 r_get_pg + 356
3   plr.so                        	0x0155b2ab plr_call_handler + 363
4   postgres                      	0x0010483a ExecMakeTableFunctionResult + 314
5   postgres                      	0x00112dc0 FunctionNext + 128
6   postgres                      	0x00107325 ExecScan + 357
7   postgres                      	0x001129e2 ExecFunctionScan + 34
8   postgres                      	0x000ffc2f ExecProcNode + 447
9   postgres                      	0x000fd9eb ExecutorRun + 827
10  postgres                      	0x001abf5f PortalRunSelect + 655
11  postgres                      	0x001acd41 PortalRun + 433
12  postgres                      	0x001a7b45 exec_simple_query + 661
13  postgres                      	0x001a97ff PostgresMain + 4751
14  postgres                      	0x00178774 ServerLoop + 2964
15  postgres                      	0x00179798 PostmasterMain + 2760
16  postgres                      	0x0012329b main + 1227
17  postgres                      	0x00001676 start + 54

Thread 0 crashed with X86 Thread State (32-bit):

  eax: 0x00000000  ebx: 0x0162ea34  ecx: 0x00d9c208  edx: 0x01c2f000
  edi: 0x7fffffff  esi: 0x00000000  ebp: 0xbfffd938  esp: 0xbfffd920
   ss: 0x0000001f  efl: 0x00000282  eip: 0x0162ea35   cs: 0x00000017
   ds: 0x0000001f   es: 0x0000001f   fs: 0x00000000   gs: 0x00000037
  cr2: 0xa0020528

Binary Images:

    0x1000 -   0x329feb +postgres ??? (???) /usr/local/pgsql/bin/postgres
  0x69b000 -   0x6b5fe7 +plpgsql.so ??? (???) /usr/local/pgsql/lib/plpgsql.so
  0x740000 -   0x790ffb +liblwgeom.so ??? (???) <90c2f28e98be32665def3518626c1ba4> /usr/local/pgsql/lib/liblwgeom.so
  0x7b8000 -   0x7c0ff7 +libgeos_c.1.dylib ??? (???) /opt/local/lib/libgeos_c.1.dylib
  0x7c9000 -   0x7d0fed +libgcc_s.1.dylib ??? (???) /usr/local/lib/libgcc_s.1.dylib
 0x13d8000 -  0x1408fff +libproj.0.dylib ??? (???) <56d1d176a8d5ca75516565dbc37e5c86> /usr/local/lib/libproj.0.dylib
 0x1422000 -  0x14d9ffb +libgeos-3.0.0.dylib ??? (???) /opt/local/lib/libgeos-3.0.0.dylib
 0x1558000 -  0x1562ffa +plr.so ??? (???) /usr/local/pgsql/lib/plr.so
 0x1568000 -  0x17aefef +libR.dylib ??? (???) <ce5d74c0dc8a1cee7773355c36fcc07b> /Library/Frameworks/R.framework/Versions/2.8/Resources/lib/libR.dylib
 0x188e000 -  0x18bbfff +libRblas.dylib ??? (???) /Library/Frameworks/R.framework/Versions/2.8/Resources/lib/libRblas.dylib
 0x18ea000 -  0x1975fff +libgfortran.2.dylib ??? (???) /usr/local/lib/libgfortran.2.dylib
 0x1aea000 -  0x1af1ff3 +libintl.3.dylib ??? (???) <dd75d7279c354e62ccba2a04c77e6840> /sw/lib/libintl.3.dylib
 0x1af8000 -  0x1beffe2 +libiconv.2.dylib ??? (???) <049458d73f22f0f3e28e6769189d592c> /sw/lib/libiconv.2.dylib
 0x1c08000 -  0x1c1efea  libedit.2.dylib ??? (???) <c98b30cb0c9e4252892382daf57fa108> /usr/lib/libedit.2.dylib
 0x1d77000 -  0x1d7cff2 +methods.so ??? (???) <bf0456d9ab9d78ba355000624b4d90fd> /Library/Frameworks/R.framework/Resources/library/methods/libs/methods.so
 0x1ebd000 -  0x1ee3ffa +grDevices.so ??? (???) <4a8fffcdeb801cb7ec61609646b2bf5d> /Library/Frameworks/R.framework/Resources/library/grDevices/libs/grDevices.so
 0x1f11000 -  0x1f68fe7 +stats.so ??? (???) <965e545b7b63e27934e45947796696ab> /Library/Frameworks/R.framework/Resources/library/stats/libs/stats.so
0x8fe00000 - 0x8fe2db43  dyld 97.1 (???) <100d362e03410f181a34e04e94189ae5> /usr/lib/dyld
0x900be000 - 0x900d6ff7  com.apple.CoreVideo 1.6.0 (20.0) <c0d869876af51283a160cd2224a23abf> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x900d7000 - 0x900e4fe7  com.apple.opengl 1.5.9 (1.5.9) <7e5048a2677b41098c84045305f42f7f> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x90153000 - 0x90161ffd  libz.1.dylib ??? (???) <545ca09467025f77131cfac09d8b9375> /usr/lib/libz.1.dylib
0x90162000 - 0x9016cfeb  com.apple.audio.SoundManager 3.9.2 (3.9.2) <caa41909dcb5a18a94bc68cd13999bd5> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound
0x9016d000 - 0x902d4ff3  libSystem.B.dylib ??? (???) <d68880dfb1f8becdbdac6928db1510fb> /usr/lib/libSystem.B.dylib
0x902d5000 - 0x9038ffe3  com.apple.CoreServices.OSServices 226.5 (226.5) <2a135d4fb16f4954290f7b72b4111aa3> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x903d3000 - 0x9042dff7  com.apple.CoreText 2.0.4 (???) <f9a90116ae34a2b0d84e87734766fb3a> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
0x904be000 - 0x90739fe7  com.apple.Foundation 6.5.7 (677.22) <8fe77b5d15ecdae1240b4cb604fc6d0b> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x9073a000 - 0x907e1feb  com.apple.QD 3.11.54 (???) <b743398c24c38e581a86e91744a2ba6e> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
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0x90c8d000 - 0x90c91fff  libmathCommon.A.dylib ??? (???) /usr/lib/system/libmathCommon.A.dylib
0x90c92000 - 0x90cd1fef  libTIFF.dylib ??? (???) <3589442575ac77746ae99ecf724f5f87> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
0x90cd2000 - 0x90e24ff3  com.apple.audio.toolbox.AudioToolbox 1.5.2 (1.5.2) /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x90e25000 - 0x90e25ff8  com.apple.ApplicationServices 34 (34) <e9cd7c823062c4382d89e3c9997f4739> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x90e37000 - 0x90e6efff  com.apple.SystemConfiguration 1.9.2 (1.9.2) <8b26ebf26a009a098484f1ed01ec499c> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
0x90e6f000 - 0x90e9afe7  libauto.dylib ??? (???) <42d8422dc23a18071869fdf7b5d8fab5> /usr/lib/libauto.dylib
0x90ed8000 - 0x90fb9ff7  libxml2.2.dylib ??? (???) <d69560099d9eb32ba7f8a17baa65a28d> /usr/lib/libxml2.2.dylib
0x9109c000 - 0x910bafff  libresolv.9.dylib ??? (???) <a8018c42930596593ddf27f7c20fe7af> /usr/lib/libresolv.9.dylib
0x910bb000 - 0x910daffa  libJPEG.dylib ??? (???) <e7eb56555109e23144924cd64aa8daec> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
0x91105000 - 0x91190fff  com.apple.framework.IOKit 1.5.1 (???) <f9f5f0d070e197a832d86751e1d44545> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
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0x9164c000 - 0x916d3ff7  libsqlite3.0.dylib ??? (???) <6978bbcca4277d6ae9f042beff643f7d> /usr/lib/libsqlite3.0.dylib
0x916d4000 - 0x916efffb  libPng.dylib ??? (???) <4780e979d35aa5ec2cea22678836cea5> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x916f0000 - 0x917a2ffb  libcrypto.0.9.7.dylib ??? (???) <69bc2457aa23f12fa7d052601d48fa29> /usr/lib/libcrypto.0.9.7.dylib
0x917f4000 - 0x91e94fff  com.apple.CoreGraphics 1.407.2 (???) <3a91d1037afde01d1d8acdf9cd1caa14> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x91e95000 - 0x91ecffe7  com.apple.coreui 1.2 (62) /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
0x91f11000 - 0x91f13ff5  libRadiance.dylib ??? (???) <8a844202fcd65662bb9ab25f08c45a62> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
0x92314000 - 0x923a0ff7  com.apple.LaunchServices 290.3 (290.3) <6f9629f4ed1ba3bb313548e6838b2888> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
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0x923b5000 - 0x923b5ffb  com.apple.installserver.framework 1.0 (8) /System/Library/PrivateFrameworks/InstallServer.framework/Versions/A/InstallServer
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0x924d8000 - 0x924dcfff  libGIF.dylib ??? (???) <572a32e46e33be1ec041c5ef5b0341ae> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
0x925d7000 - 0x925e0fff  com.apple.speech.recognition.framework 3.7.24 (3.7.24) <6a6518b392d3d41ace3dcea69d6809d9> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x927ca000 - 0x927d6ffe  libGL.dylib ??? (???) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x927d7000 - 0x927d7ffc  com.apple.audio.units.AudioUnit 1.5 (1.5) /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x92819000 - 0x92819ffd  com.apple.Accelerate.vecLib 3.4.2 (vecLib 3.4.2) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x9281a000 - 0x92cebf3e  libGLProgrammability.dylib ??? (???) <5d283543ac844e7c6fa3440ac56cd265> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x92cec000 - 0x92cecffd  com.apple.vecLib 3.4.2 (vecLib 3.4.2) /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0x92d5c000 - 0x92d5dffc  libffi.dylib ??? (???) <596e0dbf626b211741cecaa9698f271b> /usr/lib/libffi.dylib
0x92d5e000 - 0x92e25ff2  com.apple.vImage 3.0 (3.0) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x9300e000 - 0x930befff  edu.mit.Kerberos 6.0.12 (6.0.12) <685cc018c133668d0d3ac6a1cb63cff9> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x930bf000 - 0x930c6fe9  libgcc_s.1.dylib ??? (???) <28a7cbc3a5ca2982d124668306f422d9> /usr/lib/libgcc_s.1.dylib
0x930c7000 - 0x931acff3  com.apple.CoreData 100.1 (186) <8e28162ef2288692615b52acc01f8b54> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x93234000 - 0x93291ffb  libstdc++.6.dylib ??? (???) <6106b1f2b0b303b06ae476253dbb5f3f> /usr/lib/libstdc++.6.dylib
0x932e4000 - 0x9341cff7  libicucore.A.dylib ??? (???) <18098dcf431603fe47ee027a60006c85> /usr/lib/libicucore.A.dylib
0x9341d000 - 0x93441fff  libxslt.1.dylib ??? (???) <0a9778d6368ae668826f446878deb99b> /usr/lib/libxslt.1.dylib
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0x94396000 - 0x9439dffe  libbsm.dylib ??? (???) <5582985a86ea36504cca31788bccf963> /usr/lib/libbsm.dylib
0x943e5000 - 0x94423ff7  libGLImage.dylib ??? (???) <1123b8a48bcbe9cc7aa8dd8e1a214a66> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
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0x95910000 - 0x95ccefea  libLAPACK.dylib ??? (???) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
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0x96650000 - 0x966a9ff7  libGLU.dylib ??? (???) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
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0x96708000 - 0x96785fef  libvMisc.dylib ??? (???) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x968bf000 - 0x9698afff  com.apple.ColorSync 4.5.1 (4.5.1) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x9698b000 - 0x96d28fef  com.apple.QuartzCore 1.5.7 (1.5.7) <2fed2dd7565c84a0f0c608d41d4d172c> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
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0xfffe8000 - 0xfffebfff  libobjc.A.dylib ??? (???) /usr/lib/libobjc.A.dylib
0xffff0000 - 0xffff1780  libSystem.B.dylib ??? (???) /usr/lib/libSystem.B.dylib



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