[Rd] Bug in the stats package (PR#14059)

From: <j.zhang_at_dkfz-heidelberg.de>
Date: Wed, 11 Nov 2009 17:15:12 +0100 (CET)


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Hello dear Maintainer,

  I report a bug (or at least a weak point needing documentation) located in the nls.c file of the stats package. ($BASE/src/library/stats/src/nls.c, svn version 50393)

  They lie in the line 120 and 129, where the msgbuf char array is set to the size limit of 70. Intriguingly in case of long formulaes overriding this limit, the R session will crash complaining buffer overflow detected (see the attachment session_crash_report). After changing the array size to 255 (see the patch.nls file), the error is avoided. I suggest either documentating the size limit of the formulae, or to enlarge the array.

  Best wishes,
Jitao David Zhang

Attached: R.version

               _

platform i686-pc-linux-gnu

arch i686

os linux-gnu

system i686, linux-gnu

status Under development (unstable)

major 2

minor 11.0

year 2009

month 11

day 06

svn rev 50320

language R

version.string R version 2.11.0 Under development (unstable) (2009-11-06 r50320)

Jitao David Zhang
Computational Biology/Bioinformatics Ph.D. Candidate Division of Molecular Genome Analysis, DKFZ Im Neuenheimer Feld 580,
Heidelberg D-69120
Germany

Tel: 49-(0)6221-424711
Calendar:
http://www.google.com/calendar/embed?src=38m77vcknecr59sbpdj0vofndo%40group.calendar.google.com

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--------------020309030400080109090707

Content-Type: text/plain;
 name="patch.nls"
Content-Transfer-Encoding: 7bit
Content-Disposition: inline;
 filename="patch.nls"

 #define NON_CONV_FINIS_1(_ID_, _MSG_, _A1_)	\
     if(warnOnly) {				\
-	char msgbuf[70];			\
+	char msgbuf[255];			\
 	warning(_MSG_, _A1_);			\
 	sprintf(msgbuf, _MSG_, _A1_);		\
 	return CONV_INFO_MSG(msgbuf, _ID_);	\

@@ -148,7 +148,7 @@  
 #define NON_CONV_FINIS_2(_ID_, _MSG_, _A1_, _A2_)	\
     if(warnOnly) {					\
-	char msgbuf[70];				\
+	char msgbuf[255];				\
 	warning(_MSG_, _A1_, _A2_);			\
 	sprintf(msgbuf, _MSG_, _A1_, _A2_);		\
 	return CONV_INFO_MSG(msgbuf, _ID_);		\

--------------020309030400080109090707--



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https://stat.ethz.ch/mailman/listinfo/r-devel Received on Wed 11 Nov 2009 - 18:20:16 GMT

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