[R] "Missing links": Hmisc and Design docs

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From: Ted Harding (Ted.Harding@nessie.mcc.ac.uk)
Date: Thu 24 Apr 2003 - 18:51:28 EST


Message-id: <XFMail.030424095128.Ted.Harding@nessie.mcc.ac.uk>

Hi folks,

Using R Version 1.6.2 (2003-01-10)
on SuSE Linux 7.2,
I just installed Hmisc_1.5-3.tar.gz and Design_1.1-5.tar.gz
These were taken from
   http://hesweb1.med.virginia.edu/biostat/s/library/r

Checked the dependencies:

Hmisc: grid, lattice, mva, acepack -- all already installed

Design: Hmisc, survival -- survival already installed, so
        installed Hmisc first

All seems to go well till the "help" docs are compiled,
whereupon I get several reports of "missing links", as below
(where I omit cases with no such reports). I can't recall
seeing "missing links" when installing other libraries.

Two questions:
1. Have I overlooked something here, which I should have done?
2. Do these "missing links" matter?

Or is this simply a manifestation of Frank Harrell's comment, on the
above site, that "I still have not had time to fix details in the
documentation that will allow R CMD check to be passed, which would
allow me to submit the libraries to CRAN."

If that is the explanation, then I withdraw all the rest of this, with
sincere thanks to Frank for generating these packages and making them
available (and with experience-based sympathy for the task of getting
such details right!).

With thanks, and best wishes to all,
Ted.

Misc:
=====
  abs.error.pred text html latex example
     missing link(s): ols validate.ols
  aregImpute text html latex example
     missing link(s): mice
  bootkm text html latex example
     missing link(s): Survival.cph Quantile.cph
  data.frame.create.modify.check text html latex example
     missing link(s): hist.data.frame merge.levels
  dataRep text html latex example
     missing link(s): crosstabs
  deff text html latex example
     missing link(s): bootcov robcov
  impute text html latex example
     missing link(s): na.include
  labcurve text html latex example
     missing link(s): key
  mtitle text html latex example
     missing link(s): pstamp
  panel.bpplot text html latex example
     missing link(s): trellis
  plsmo text html latex example
     missing link(s): trellis
  ps.slide text html latex example
     missing link(s): win.slide fig mgp.axis.labels pdf.graph
  rcspline.eval text html latex example
     missing link(s): Design.trans
  rcspline.plot text html latex example
     missing link(s): lrm cph lrm.fit
  rcspline.restate text html latex example
     missing link(s): Design.trans
  reShape text html latex example
     missing link(s): crosstabs
  rm.boot text html latex example
     missing link(s): lm.fit.qr Design bootcov rm.impute
  scat1d text html latex example
     missing link(s): plot.Design nomogram.Design hist.data.frame
                       datadensity.plot.Design
  spower text html latex example
     missing link(s): cph
  summary.formula text html latex example
     missing link(s): crosstabs trellis lattice
  sys text html latex
     missing link(s): dos
  transace text html latex example
     missing link(s): ols validate predab.resample nomogram
  transcan text html latex example
     missing link(s): mice
  upData text html latex example
     missing link(s): importData exportData timeDate format.timeDate
  varclus text html latex example
     missing link(s): na.pattern
  xYplot text html latex example
     missing link(s): trellis error.bar axis.time
  sas.get text html latex example
     missing link(s): sas.contents sas.datasets timeDate format.timeDate

Design:
=======
  cph text html latex example
     missing link(s): validate.Design calibrate.Design
  gendata text html latex example
     missing link(s): data.ed ed using.X
  latex.Design text html latex example
     missing link(s): print.latex
  lrm text html latex example
     missing link(s): latex.lrm
  ols text html latex example
     missing link(s): validate.Design latex.ols
  pentrace text html latex example
     missing link(s): nlminb
  plot.Design text html latex example
     missing link(s): key matxv survest key mgp.axis.labels win.slide
     gs.slide
  pphsm text html latex example
     missing link(s): print.pphsm
  print.cph text html latex
     missing link(s): print.cphfit print.coxreg
  print.cph.fit text html latex
     missing link(s): print.coxreg
  psm text html latex example
     missing link(s): survest
  summary.Design text html latex example
     missing link(s): confbar
  survplot text html latex example
     missing link(s): survest key mgp.axis.labels win.slide gs.slide

--------------------------------------------------------------------
E-Mail: (Ted Harding) <Ted.Harding@nessie.mcc.ac.uk>
Fax-to-email: +44 (0)870 167 1972
Date: 24-Apr-03 Time: 09:51:28
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