RE: R-beta: survival4

Buyukisik, Osman (Osman.Buyukisik@ae.ge.com)
Tue, 27 Jan 1998 08:12:05 -0500


Message-Id: <0302875C631AD11198DE00600806C63747A003@ev009msxaege.ae.ge.com>
From: "Buyukisik, Osman (GEAE)" <Osman.Buyukisik@ae.ge.com>
To: r-help@stat.math.ethz.ch, "'Goran Brostrom'" <gb@stat.umu.se>
Subject: RE: R-beta: survival4
Date: Tue, 27 Jan 1998 08:12:05 -0500

Hmm... I have the same problem on hpux10.20. I put the additional libs into a
subdir called contrib, and R INSTALL from there. I have R-0.61.1 Alpha Dec21
1997. Without restored data they work OK.
Osman

> ----------
> From: 	Goran Brostrom[SMTP:gb@stat.umu.se]
> Sent: 	Tuesday, January 27, 1998 3:07 AM
> To: 	r-help@stat.math.ethz.ch
> Subject: 	R-beta: survival4
> 
> 
> I have installed R (latest) on two machines running RedHat Linux,
> Versions 4.2 and 5.0, respectively. In both cases I get the 
> following error: Starting R in an empty (ie, no .RData file) folder
> is fine, coxph works, but if I quit, save the work sheet and 
> start R again I get a "not in load table" error. See below.
> (On my third installation, Solaris2.4, coxph still bombs completely,
> saying
> ..... 
> ld.so.1: /export/home1/local/R-0.61.1/bin/R.binary: fatal: relocation
> error: symbol not found: S_alloc: referenced in
> /export/home1/local/R-0.61.1/library/survival4/libs/survival4.so
> Killed
> .)  
> -------------------------------------------------------------------
> > library(survival4)
> Autoloading required package: splines 
> > ls()
> character(0)
> > z_c(1,0,1)
> > tid_c(1,2,3)
> > ev_c(1,1,1)
> > coxph(Surv(tid, ev) ~ z)
> Call:
> coxph(formula = Surv(tid, ev) ~ z)
> 
> 
>     coef exp(coef) se(coef)      z    p
> z -0.347     0.707     1.44 -0.241 0.81
> 
> Likelihood ratio test=0.06  on 1 df, p=0.81  n= 3 
> > q()
> Save workspace image? [y/n/c]: y
> [gb@lasker R]$ R
> ...............................
> [Previously saved workspace restored]
> 
> > library(survival4)
> Autoloading required package: splines 
> > coxph(Surv(tid, ev) ~ z)
> Error in .C("coxfit2", iter = as.integer(iter.max), 
> as.integer(n), as.integer(nvar),  : C/Fortran function not in load table
> ------------------------------------------------------------------------
> 
> I may add that I install the survival ansd spline packages on the fly
> when I install R, that is, I unpack them in $(RHOME)/src/library, then
> in $(RHOME) I do the usual ./configure, make, etc, and everything
> gets installed at once. Is this a correct way of doing it?
> 
> Goran
> ---
> Goran Brostrom                         phone : +46 90 7865223
> Department of Statistics                              7865213 (secr)
> Umea University                        fax   :        7866614
> S-90187 Umea, Sweden                   e-mail: gb@stat.umu.se
> 
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