[R] R abrupt exit

From: jacob <zjz999_at_gmail.com>
Date: Fri, 02 Apr 2010 11:30:20 -0400


Dear Lists:

I recently ran quite annoyance problem while running R on Ubuntu 9.10.  When running the program, the system suddenly exit from the R session with the following warnings:

############################ #############
OMP: Hint: This may cause performance degradation and correctness issues. Set environment variable KMP_DUPLICATE_LIB_OK=TRUE to ignore this problem and force the program to continue anyway. Please note that the use of KMP_DUPLICATE_LIB_OK is unsupported and using it may cause undefined behavior. For more information, please contact Intel(R) Premier Support.
Aborted
##########################################
I have to restart R again, and all the calculations are being lost.

According to the warnings, I set the environment to true, no good. I reinstalled the R program again, no good either. I googled the problem, it seems that there was no R help on the topic so far.

Any suggestions that the whole OS may have conflicts? I have only one copy of the following file on my computer system?

/usr/lib/R/lib/libguide.so

Thanks.

jacob

#############################################################################
>options("KMP_DUPLICATE_LIB_OK")
$KMP_DUPLICATE_LIB_OK
[1] TRUE

> sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-pc-linux-gnu

locale:

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] datasets grDevices splines graphics stats utils methods
[8] base

other attached packages:

 [1] Design_2.3-0         Hmisc_3.7-0          survival_2.35-8
 [4] GEOquery_2.11.3      RCurl_1.4-0          bitops_1.0-4.1
 [7] affy_1.24.2          Biobase_2.6.1        preprocessCore_1.8.0

[10] R.methodsS3_1.0.3

loaded via a namespace (and not attached):
[1] affyio_1.14.0 cluster_1.12.1 grid_2.10.1 lattice_0.18-3



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