[R] Problem calling R from within perl script on Windows

From: Barry Hall <barryhall_at_zeninternet.com>
Date: Fri, 18 Jun 2010 12:11:53 -0700 (PDT)

I need to call R from within a Perl script. I do so using a system call like this:
@args = ('R --vanilla --quiet --file=Rblock');
system(@args) == 0 or die "system @args failed: $!";

The script works perfectly when run in Mac OSX or Linux. In Windows XP it fails with the message " 'R' is not recognized as an internal or external command, operable program or batch file".

To ensure that R was properly installed and that the environment variable "path" was correctly set, I executed the same command (R --vanilla --quiet --file=Rblock) from the command line and it worked perfectly; i.e. R ran with the expected behavior.

Similar system calls to other external programs, e.g.
@args = ('Notepad');

system(@args) == 0 or die "system @args failed: $!"; work perfectly.

Is there any obvious reason that this particular call works from the command line but not from within a perl script?

Thanks for any assistance

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Received on Fri 18 Jun 2010 - 20:51:16 GMT

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