[R] Trouble compiling igraph. . .

From: jim smith <n0oct_at_sbcglobal.net>
Date: Wed, 23 Jun 2010 06:29:41 -0500


Been and R-user for about 5 years now in an industrial setting, and always find the mailing list most helpful. I have run into problem compiling igraph on R. I have contacted the maintainer of igraph, and he has determined that it is not an igraph problem.

System is FreeBSD 7.2, R-2.10.1 [also have a sandbox machine running FreeBSD 7.3, R-2.11]. Both machines fail the installation of igraph. Here is the error:

Error in dyn.load(file, DLLpath = DLLpath, ...) :   unable to load shared library
'/usr/local/lib/R/library/igraph/libs/igraph.so': /usr/lib/libstdc+
+.so.6: version GLIBCXX_3.4.11 required
by /usr/local/lib/R/library/igraph/libs/igraph.so not found Error : .onLoad failed in 'loadNamespace' for 'igraph'

I built the package, then ran the linker ldd to determine if libstdc+
+.so.6 were in the correct place [and found by igraph]:

libxml2.so.5 => /usr/local/lib/libxml2.so.5 (0x340e0000) libz.so.4 => /lib/libz.so.4 (0x33d89000) libiconv.so.3 => /usr/local/lib/libiconv.so.3 (0x3420a000) libR.so => /usr/local/lib/libR.so (0x34300000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x3455c000)

libm.so.5 => /lib/libm.so.5 (0x33d9b000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x33db0000)
libc.so.7 => /lib/libc.so.7 (0x33c83000)
libblas.so.2 => /usr/local/lib/libblas.so.2 (0x33dbb000)
libgfortran.so.3 => /usr/local/lib/gcc44/libgfortran.so.3(0x34651000) 
libintl.so.8 => /usr/local/lib/libintl.so.8 (0x34709000)
libreadline.so.7 => /lib/libreadline.so.7 (0x34712000)
libpcre.so.0 => /usr/local/lib/libpcre.so.0 (0x34744000) liblzma.so.0 => /usr/local/lib/liblzma.so.0 (0x34778000) libbz2.so.3 => /usr/lib/libbz2.so.3 (0x347a1000) libicuuc.so.38 => /usr/local/lib/libicuuc.so.38 (0x347b2000) libicui18n.so.38 => /usr/local/lib/libicui18n.so.38 (0x348d0000) libncurses.so.7 => /lib/libncurses.so.7 (0x34a27000) libthr.so.3 => /lib/libthr.so.3 (0x34a66000) libicudata.so.38 => /usr/local/lib/libicudata.so.38 (0x34a7b000)

So it appears to be there, but still I get this error. Any guidance? Thanks.

-- 
jim smith <n0oct_at_sbcglobal.net>

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Received on Wed 23 Jun 2010 - 11:32:51 GMT

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