[R] Installing Rmpi on hpc

From: Brian Smith <bsmith030465_at_gmail.com>
Date: Mon, 14 Mar 2011 10:59:56 -0400


Hi,

I was trying to install the package Rmpi on a hpc cluster running SGE. The command, and the sessionInfo() is as follows:



> install.packages("Rmpi",dependencies=TRUE) also installing the dependency ‘rsprng’

trying URL '
http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/rsprng_1.0.tar.gz' Content type 'application/x-gzip' length 35916 bytes (35 Kb) opened URL



downloaded 35 Kb

trying URL '
http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/Rmpi_0.5-9.tar.gz' Content type 'application/x-gzip' length 87953 bytes (85 Kb) opened URL



downloaded 85 Kb

The downloaded packages are in

        ‘/tmp/RtmpShmM5e/downloaded_packages’ Updating HTML index of packages in '.Library' Warning messages:
1: In install.packages("Rmpi", dependencies = TRUE) :   installation of package 'rsprng' had non-zero exit status 2: In install.packages("Rmpi", dependencies = TRUE) :   installation of package 'Rmpi' had non-zero exit status >

> sessionInfo()
R version 2.11.1 (2010-05-31)
x86_64-unknown-linux-gnu

locale:

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] tools_2.11.1
>

Is there something else that I need to do to install this, and other parallel R packages?

thanks!

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