Re: [R] Whole genome searching of 100bp "D" sequence

From: Ben Bolker <bbolker_at_gmail.com>
Date: Fri, 15 Apr 2011 22:14:48 +0000

Amos Folarin <amosfolarin <at> gmail.com> writes:

> I was wondering I'm going about this in the correct way. I need to test if
> there are coding sequences or exons in hg19 which match a string of 100bp
> "D" i.e. [A,G or T]. However I'm getting a strange result.
>
> I get a hit on chr7, using the 100bp search however when I search with 60bp
> sequence of "D" I don't get any hits.
>

  Try posting this to the Bioconductor e-mail list, where you will have a much better likelihood of getting useful advice. Only a few hard-core bioinformatics people on this list. (Do mention that you posted here first.)

  Ben Bolker



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