Re: [R] one question about bioconductor

From: Philipp Pagel <>
Date: Thu, 31 Mar 2011 19:59:46 +0200

On Thu, Mar 31, 2011 at 09:32:06AM -0700, wang peter wrote:
> dear lady and gentalmen:
> i am gaoshan from kansas university.
> i used such coding to deal with gel data
> data <- ReadAffy()
> Warning messages:
> 1: In file(out, "wt") :
> cannot open file
> 'C:\Users\gaoshan\AppData\Local\Temp\RtmpvsyXOV\Rhttpd3f0b2e85': No such
> file or directory

As the message says: there is something wrong with the path.

In order to get more helpful replies, you should show the actual code you used and also give a hint about the spoecific packages you were using. E.g. ReadAffy most certainly requires at least a filename which seems to be missing from your comamnd above.

In addition, I recommend to post your question on the bioconductor mailing list.



Dr. Philipp Pagel
Lehrstuhl für Genomorientierte Bioinformatik
Technische Universität München
Wissenschaftszentrum Weihenstephan
Maximus-von-Imhof-Forum 3
85354 Freising, Germany

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