From: Nick Sabbe <nick.sabbe_at_ugent.be>

Date: Fri, 01 Apr 2011 13:34:17 +0200

Date: Fri, 01 Apr 2011 13:34:17 +0200

See the warning in ?subset.

Passing the column name of lvar is not the same as passing the 'contextual
column' (as I coin it in these circumstances).
You can solve it by indeed using [] instead.

For my own comfort, here is the relevant line from your original function: Data.tmp <- subset(Fulldf, lvar==subgroup, select=c("xvar","yvar")) Which should become something like (untested but should be close): Data.tmp <- Fulldf[Fulldf[,"lvar"]==subgroup, c("xvar","yvar")]

This should be a lot easier to translate based on column names, as the column names are now used as such.

**HTH,
**
Nick Sabbe

-- ping: nick.sabbe_at_ugent.be link: http://biomath.ugent.be wink: A1.056, Coupure Links 653, 9000 Gent ring: 09/264.59.36 -- Do Not Disapprove -----Original Message----- From: r-help-bounces_at_r-project.org [mailto:r-help-bounces_at_r-project.org] On Behalf Of E Hofstadler Sent: vrijdag 1 april 2011 13:09 To: r-help_at_r-project.org Subject: [R] programming: telling a function where to look for the entered variables Hi there, Could someone help me with the following programming problem..? I have written a function that works for my intended purpose, but it is quite closely tied to a particular dataframe and the names of the variables in this dataframe. However, I'd like to use the same function for different dataframes and variables. My problem is that I'm not quite sure how to tell my function in which dataframe the entered variables are located. Here's some reproducible data and the function:Received on Fri 01 Apr 2011 - 11:43:03 GMT

# create reproducible data

set.seed(124) xvar <- sample(0:3, 1000, replace = T) yvar <- sample(0:1, 1000, replace=T) zvar <- rnorm(100) lvar <- sample(0:1, 1000, replace=T) Fulldf <- as.data.frame(cbind(xvar,yvar,zvar,lvar)) Fulldf$xvar <- factor(xvar, labels=c("blue","green","red","yellow")) Fulldf$yvar <- factor(yvar, labels=c("area1","area2")) Fulldf$lvar <- factor(lvar, labels=c("yes","no")) and here's the function in the form that it currently works: from a subset of the dataframe Fulldf, a contingency table is created (in my actual data, several other operations are then performed on that contingency table, but these are not relevant for the problem in question, therefore I've deleted it) .

# function as it currently works: tailored to a particular dataframe

(Fulldf) myfunct <- function(subgroup){ # enter a particular subgroup for which the contingency table should be calculated (i.e. a particular value of the factor lvar) Data.tmp <- subset(Fulldf, lvar==subgroup, select=c("xvar","yvar"))

#restrict dataframe to given subgroup and two columns of the original

dataframe Data.tmp <- na.omit(Data.tmp) # exclude missing values indextable <- table(Data.tmp$xvar, Data.tmp$yvar) # make contingency table return(indextable) }

#Since I need to use the function with different dataframes and

variable names, I'd like to be able to tell my function the name of the dataframe and variables it should use for calculating the index. This is how I tried to modify the first part of the #function, but it didn't work:

# function as I would like it to work: independent of any particular

dataframe or variable names (doesn't work) myfunct.better <- function(subgroup, lvarname, yvarname, dataframe){

#enter the subgroup, the variable names to be used and the dataframe

in which they are found Data.tmp <- subset(dataframe, lvarname==subgroup, select=c("xvar", deparse(substitute(yvarname)))) # trying to subset the given dataframe for the given subgroup of the given variable. The variable "xvar" happens to have the same name in all dataframes) but the variable yvarname has different names in the different dataframes Data.tmp <- na.omit(Data.tmp) indextable <- table(Data.tmp$xvar, Data.tmp$yvarname) # create the contingency table on the basis of the entered variables return(indextable) } calling myfunct.better("yes", lvarname=lvar, yvarname=yvar, dataframe=Fulldf) results in the following error: Error in `[.data.frame`(x, r, vars, drop = drop) : undefined columns selected My feeling is that R doesn't know where to look for the entered variables (lvar, yvar), but I'm not sure how to solve this problem. I tried using with() and even attach() within the function, but that didn't work. Any help is greatly appreciated. Best, Esther P.S.: Are there books that elaborate programming in R for beginners -- and I mean things like how to best use vectorization instead of loops and general "best practice" tips for programming. Most of the books I've been looking at focus on applying R for particular statistical analyses, and only comparably briefly deal with more general programming aspects. I was wondering if there's any books or tutorials out there that cover the latter aspects in a more elaborate and systematic way...? ______________________________________________ R-help_at_r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help_at_r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

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