Re: [Rd] Log file of building vignette in RCMD check

From: Uwe Ligges <ligges_at_statistik.tu-dortmund.de>
Date: Mon, 06 Jun 2011 18:15:42 +0200

On 06.06.2011 15:30, Stefan McKinnon Høj-Edwards wrote:
> Hello,
>
> I am trying to run "RCMD check" on a package. It performs OK, with the exception of a single warning:
> * checking package vignettes in 'inst/doc' ... WARNING
> Package vignette(s) without corresponding PDF:
> AnnotationFuncsUserguide.Rnw

R CMD build should build the vignettes. If it did not succeed, see its output for details.

Uwe Ligges

>
> As I understand the problem, the vignette is not built. However, I have no problems in doing so manually.
> How do I fix this problem? I cannot find any logs for building the vignette, however the output from building the pdf-file of the manual is found in the .Rcheck folder.
>
> On a similar note, as my vignette includes a biblio, I have to run "latex" twice to get the citations referenced properly with a number. Is this an issue? How can I work around it? (The package is submitted to BioC, so there might be other rules there?)
>
> Thank you in advanced.
> Yours sincerely,
>
> Stefan McKinnon Høj-Edwards Dept. of Genetics and Biotechnology

> PhD student Faculty of Agricultural Sciences
> stefan.hoj-edwards_at_agrsci.dk Aarhus University
> Tel.: +45 8999 1291 Blichers Allé 20, Postboks 50
> Web: www.iysik.com DK-8830 Tjele
> Tel.: +45 8999 1900
> Web: www.agrsci.au.dk
>
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