Re: [R] functions pandit and treebase in the package apTreeshape

From: Arnau Mir <arnau.mir_at_uib.es>
Date: Sat, 07 May 2011 09:56:49 +0200

El 07/05/11 09:49, Arnau Mir escribió:
> El 06/05/11 01:33, Andrew Robinson escribió:
>> Hi Arnau,
>>
>> please send the output of sessionInfo() and the exact commands and
>> response that you used to install and load apTreeshape.
>>
>

Sorry, I forgot the commands.
Here they are:

 > library(apTreeshape)

Loading required package: ape
Loading required package: quantreg
Loading required package: SparseM
Package SparseM (0.89) loaded.
        To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

     backsolve

Package quantreg (4.67) loaded.

         To cite, see citation("quantreg")

 > pandit(2)
Error: no se pudo encontrar la función "pandit" (the function "pandit" cannot be found)
 > treebase(2)
Error: no se pudo encontrar la función "treebase" (the function treebase cannot be found)
 > sessionInfo()

Arnau.

> Here It is:
>
> > sessionInfo()
> R version 2.12.1 (2010-12-16)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
> [1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=es_ES.UTF-8 LC_COLLATE=es_ES.UTF-8
> [5] LC_MONETARY=C LC_MESSAGES=es_ES.UTF-8
> [7] LC_PAPER=es_ES.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] quantreg_4.67 SparseM_0.89 ape_2.5-3
> apTreeshape_1.4-3
>
> loaded via a namespace (and not attached):
> [1] gee_4.13-14 grid_2.12.1 lattice_0.19-17 nlme_3.1-97
>
>
> Arnau.
>
>> Cheers
>>
>> Andrew
>>
>> On Thu, May 05, 2011 at 04:42:58PM +0200, Arnau Mir wrote:
>>> Hello.
>>>
>>> I'm trying to use the functions pandit and treebase. They are in the
>>> package apTreeshape. Once I've loaded the package, R responses:
>>>
>>> - no function pandit/treebase.
>>>
>>> Somebody knows why or what is the reason?
>>>
>>>
>>> Thanks,
>>>
>>> Arnau.
>>> ------------------------------------------------------------
>>> Arnau Mir Torres
>>> Edifici A. Turmeda
>>> Campus UIB
>>> Ctra. Valldemossa, km. 7,5
>>> 07122 Palma de Mca.
>>> tel: (+34) 971172987
>>> fax: (+34) 971173003
>>> email: arnau.mir_at_uib.es
>>> URL: http://dmi.uib.es/~arnau
>>> ------------------------------------------------------------
>>>
>>>
>>> [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> R-help_at_r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>
>

-- 
------------------------------------------------------------
Arnau Mir Torres
Edifici A. Turmeda
Campus UIB
Ctra. Valldemossa, km. 7,5
07122 Palma de Mca.
tel: (+34) 971172987
fax: (+34) 971173003
email: arnau.mir_at_uib.es
URL: http://dmi.uib.es/~arnau

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Received on Sat 07 May 2011 - 08:00:23 GMT

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