[R] Error in AnnotationDbi package - makeProbePackage

From: Helga Garcia <hgarcia_at_itqb.unl.pt>
Date: Sun, 08 May 2011 22:15:17 +0100

Dear all,

We have developed our own Affymetrix chip (Custom Express Array, PM-only with two species).
I want to analyse the data with the limma package, but for that I need to built my own CDF package,
probe package and built the filters to analyse one specie or another. I'm using the makeProbePackage available in the AnnotationDbi (for a R-2.13.0) but I got the following error message:

Error in rep(NA, max(pm1, mm1, pm2, mm2)) : invalid 'times' argument

I already tried an old version of R-2.9.1 with a package matchprobes (that is no longer update for R-2.13.0)
but the same error occurs.

Does anyone knows how could I overcome this problem? Thank you very much for your attention.
Best Regards,

Helga Garcia

PhD student
Applied and Environmental Mycology Lab/Molecular Thermodynamics Lab


	[[alternative HTML version deleted]]

R-help_at_r-project.org mailing list
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Received on Sun 08 May 2011 - 21:18:51 GMT

This quarter's messages: by month, or sorted: [ by date ] [ by thread ] [ by subject ] [ by author ]

All messages

Archive maintained by Robert King, hosted by the discipline of statistics at the University of Newcastle, Australia.
Archive generated by hypermail 2.2.0, at Sun 08 May 2011 - 23:50:05 GMT.

Mailing list information is available at https://stat.ethz.ch/mailman/listinfo/r-help. Please read the posting guide before posting to the list.

list of date sections of archive