[R] Trying to install rJava

From: Dat Mai <dat.d.mai_at_gmail.com>
Date: Sat, 21 May 2011 05:18:19 +0000

Hello All,

I'm trying to install rJava in ubuntu, and ended up with the following:

~$ sudo R CMD javareconf JAVAC=/usr/lib/jvm/java-6-openjdk/jre/../bin/javac JAR=/usr/bin/jar JAVAH=/usr/bin/javah

Java interpreter : /usr/bin/java
Java version     : 1.6.0_24
Java home path   : /usr/lib/jvm/java-6-sun-

/usr/lib64/R/bin/javareconf: 158:
/usr/lib/jvm/java-6-openjdk/jre/../bin/javac: not found
Java compiler    : not functional
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar
Java library path:
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -L$(JAVA_HOME)/lib/amd64 -L$(JAVA_HOME)/../lib/amd64 -L/usr/java/packages/lib/amd64 -L/usr/lib64 -L/lib64 -L/lib -L/usr/lib -ljvm
JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux

Updating Java configuration in /etc/R

I'm guessing that the problem lies in the line with "/usr/lib64/R/bin/javareconf: 158:
/usr/lib/jvm/java-6-openjdk/jre/../bin/javac: not found", leading to the
"not functional" Java compiler. How would I solve this issue?

Dat Mai
PhD Rotation Student
Albert Einstein College of Medicine

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Received on Sat 21 May 2011 - 05:22:08 GMT

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