Re: [R] RGL package installation problem on Centos

From: Duncan Murdoch <murdoch.duncan_at_gmail.com>
Date: Mon, 23 May 2011 14:37:31 -0400

On 11-05-23 9:43 AM, john herbert wrote:
> Dear R users,
> I have installed the latest version of R from source on Centos (using
> configure and make install).
> This seemed to work fine, with no Errors reported and R at the command line
> starts R.
>
> However, if I try and installed the package rgl using;
> install.packages("rgl")
> I get the following error;

The error sounds like one reported back in November on Ubuntu. As in that case, I don't know what the cause is, but the debugging advice I gave then might help you to determine it. Here's a copy of a recent message on the topic.

Duncan Murdoch

> FYI, I have downloaded the latest version of rgl from CRAN and successfully installed and used it on my 64-bit Ubuntu (10.10) build of R-2.13.0. I don't know what has changed (exactly) for it to work now versus when we communicated six-months ago, but thanks for maintaining such an excellent resource for the R community.
>
>
> cheers...
>
> Brandon
> On 23 November 2010 18:31, Duncan Murdoch <murdoch.duncan_at_gmail.com> wrote:
>
> On 23/11/2010 1:02 PM, Brandon Whitcher wrote:
>
> Apologies for emailing you directly, but I wanted to ask for your help as
> quickly as possible. I have R 2.12.0 installed on my Ubuntu 64-bit 10.04
> laptop. I have installed rgl (from CRAN) and it does compile/install.
> However, when it is loaded into R, I get a segmentation fault (end of
> message). The configuration doesn't throw up anything obvious to me... but
> I'm not such an expert. Any suggestions would be great.
>
>
> I'd try building and running it in 32 bit mode. I don't have a 64 bit Ubuntu machine to run on. I have run it on 32 bit Ubuntu (on a Mac laptop).
>
> You could also try installing it in 64 bit mode without the automatic test load (use --no-test-load on the INSTALL command line), and see if it segfaults in a regular situation; my guess is that it will. But in this case you can run it under a debugger, and maybe get some more information about what's going wrong.
>
> Duncan Murdoch
>
>
>
> * installing *source* package 'rgl' ...
> checking for gcc... gcc -m64 -std=gnu99
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc -m64 -std=gnu99 accepts -g... yes
> checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -m64 -std=gnu99 -E
> checking for gcc... (cached) gcc -m64 -std=gnu99
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether gcc -m64 -std=gnu99 accepts -g... (cached) yes
> checking for gcc -m64 -std=gnu99 option to accept ISO C89... (cached) none
> needed
> checking for libpng-config... yes
> configure: using libpng-config
> configure: using libpng dynamic linkage
> checking for X... libraries , headers
> checking GL/gl.h usability... yes
> checking GL/gl.h presence... yes
> checking for GL/gl.h... yes
> checking GL/glu.h usability... yes
> checking GL/glu.h presence... yes
> checking for GL/glu.h... yes
> checking for glEnd in -lGL... yes
> checking for gluProject in -lGLU... yes
> checking for freetype-config... yes
> configure: using Freetype and FTGL
> configure: creating ./config.status
> config.status: creating src/Makevars
>
> cheers...
>
> Brandon
>
>
> ** testing if installed package can be loaded
>
> *** caught segfault ***
> address 0x4, cause 'memory not mapped'
>
> Traceback:
> 1: .Call(rgl_init, initValue)
> 2: rgl.init(initValue)
> 3: fun(...)
> 4: doTryCatch(return(expr), name, parentenv, handler)
> 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 6: tryCatchList(expr, classes, parentenv, handlers)
> 7: tryCatch(fun(...), error = identity)
> 8: runHook(".onLoad", package, env, package.lib, package)
> 9: loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
> keep.source)
> 10: doTryCatch(return(expr), name, parentenv, handler)
> 11: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 12: tryCatchList(expr, classes, parentenv, handlers)
> 13: tryCatch(expr, error = function(e) { call<- conditionCall(e) if
> (!is.null(call)) { if (identical(call[[1L]],
> quote(doTryCatch))) call<- sys.call(-4L) dcall<-
> deparse(call)[1L] prefix<- paste("Error in", dcall, ": ")
> LONG<- 75L msg<- conditionMessage(e) sm<- strsplit(msg,
> "\n")[[1L]] w<- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type
> = "w") if (is.na(w)) w<- 14L + nchar(dcall, type = "b")
> + nchar(sm[1L], type = "b") if (w> LONG)
> prefix<- paste(prefix, "\n ", sep = "") } else prefix<- "Error :
> " msg<- paste(prefix, conditionMessage(e), "\n", sep = "")
> .Internal(seterrmessage(msg[1L])) if (!silent&&
> identical(getOption("show.error.messages"), TRUE)) { cat(msg,
> file = stderr()) .Internal(printDeferredWarnings()) }
> invisible(structure(msg, class = "try-error"))})
> 14: try({ ns<- loadNamespace(package, c(which.lib.loc, lib.loc),
> keep.source = keep.source) dataPath<- file.path(which.lib.loc, package,
> "data") env<- attachNamespace(ns, pos = pos, dataPath =
> dataPath, deps)})
> 15: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return =
> TRUE)
> 16: withCallingHandlers(expr, packageStartupMessage = function(c)
> invokeRestart("muffleMessage"))
> 17: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
> character.only = TRUE, logical.return = TRUE))
> 18: doTryCatch(return(expr), name, parentenv, handler)
> 19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 20: tryCatchList(expr, classes, parentenv, handlers)
> 21: tryCatch(expr, error = function(e) { call<- conditionCall(e) if
> (!is.null(call)) { if (identical(call[[1L]],
> quote(doTryCatch))) call<- sys.call(-4L) dcall<-
> deparse(call)[1L] prefix<- paste("Error in", dcall, ": ")
> LONG<- 75L msg<- conditionMessage(e) sm<- strsplit(msg,
> "\n")[[1L]] w<- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type
> = "w") if (is.na(w)) w<- 14L + nchar(dcall, type = "b")
> + nchar(sm[1L], type = "b") if (w> LONG)
> prefix<- paste(prefix, "\n ", sep = "") } else prefix<- "Error :
> " msg<- paste(prefix, conditionMessage(e), "\n", sep = "")
> .Internal(seterrmessage(msg[1L])) if (!silent&&
> identical(getOption("show.error.messages"), TRUE)) { cat(msg,
> file = stderr()) .Internal(printDeferredWarnings()) }
> invisible(structure(msg, class = "try-error"))})
> 22: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
> character.only = TRUE, logical.return = TRUE)))
> 23: do_install_source(pkg_name, instdir, pkg, desc)
> 24: do_install(pkg)
> 25: tools:::.install_packages()
> aborting ...
> Segmentation fault
>
> The downloaded packages are in
> '/tmp/RtmpFC4Uwq/downloaded_packages'
> Warning message:
> In install.packages("rgl") :
> installation of package 'rgl' had non-zero exit status
>
>
>

Continuing with John's post...

>
> installing to /usr/local/lib64/R/library/rgl/libs
> ** R
> ** demo
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices ...
> ** testing if installed package can be loaded
> *** caught segfault ***
> address (nil), cause 'memory not mapped'
> aborting ...
> sh: line 1: 23732 Segmentation fault '/usr/local/lib64/R/bin/R'
> --no-save --slave< /tmp/RtmpkvIjOb/file6d97876
> ERROR: loading failed
> * removing ‚/usr/local/lib64/R/library/rgl‚
> The downloaded packages are in
> ‚/tmp/Rtmp5OaGuQ/downloaded_packages‚
> Updating HTML index of packages in '.Library'
> Making packages.html ... done
> Warning message:
> In install.packages("rgl") :
> installation of package 'rgl' had non-zero exit status
> I read that Open GL header files have to be present and are in
> /usr/include/GL.
> I also read about different graphics cards causing problems but I don't know
> how to find this info out.
>
> Any help appreciated and full error message included below.
>
> Thanks,
>
>> sessionInfo()
> R version 2.13.0 (2011-04-13)
> Platform: x86_64-unknown-linux-gnu (64-bit)
> locale:
> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
> [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> #################### full error ######################
>> install.packages("rgl")
> --- Please select a CRAN mirror for use in this session ---
> Loading Tcl/Tk interface ... done
> trying URL 'http://cran.ma.imperial.ac.uk/src/contrib/rgl_0.92.798.tar.gz'
> Content type 'application/x-gzip' length 1677772 bytes (1.6 Mb)
> opened URL
> ==================================================
> downloaded 1.6 Mb
> * installing *source* package ‚rgl‚ ...
> checking for gcc... gcc -std=gnu99
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc -std=gnu99 accepts -g... yes
> checking for gcc -std=gnu99 option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -std=gnu99 -E
> checking for gcc... (cached) gcc -std=gnu99
> checking whether we are using the GNU C compiler... (cached) yes
> checking whether gcc -std=gnu99 accepts -g... (cached) yes
> checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed
> checking for libpng-config... yes
> configure: using libpng-config
> configure: using libpng dynamic linkage
> checking for X... libraries , headers
> checking GL/gl.h usability... yes
> checking GL/gl.h presence... yes
> checking for GL/gl.h... yes
> checking GL/glu.h usability... yes
> checking GL/glu.h presence... yes
> checking for GL/glu.h... yes
> checking for glEnd in -lGL... yes
> checking for gluProject in -lGLU... yes
> checking for freetype-config... yes
> configure: using Freetype and FTGL
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c BBoxDeco.cpp -o BBoxDeco.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Background.cpp -o
> Background.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Color.cpp -o Color.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Disposable.cpp -o
> Disposable.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Light.cpp -o Light.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c LineSet.cpp -o LineSet.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c LineStripSet.cpp -o
> LineStripSet.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Material.cpp -o Material.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c PointSet.cpp -o PointSet.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c PrimitiveSet.cpp -o
> PrimitiveSet.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c QuadSet.cpp -o QuadSet.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c RenderContext.cpp -o
> RenderContext.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Shape.cpp -o Shape.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c SphereMesh.cpp -o
> SphereMesh.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c SphereSet.cpp -o SphereSet.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c SpriteSet.cpp -o SpriteSet.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c String.cpp -o String.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Surface.cpp -o Surface.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c TextSet.cpp -o TextSet.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Texture.cpp -o Texture.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c Viewpoint.cpp -o Viewpoint.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c api.cpp -o api.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c assert.cpp -o assert.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c callbacks.cpp -o callbacks.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c device.cpp -o device.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c devicemanager.cpp -o
> devicemanager.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c fps.cpp -o fps.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c ftgl.cpp -o ftgl.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c geom.cpp -o geom.o
> gcc -std=gnu99 -I/usr/local/lib64/R/include -DHAVE_PNG_H
> -I/usr/include/libpng12 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2
> -Iext -I/usr/local/include -fpic -g -O2 -c gl2ps.c -o gl2ps.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c glErrors.cpp -o glErrors.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c glgui.cpp -o glgui.o
> glgui.cpp: In constructor ‚GLFTFont::GLFTFont(const char*, int, double,
> const char*)‚:
> glgui.cpp:118: warning: converting to ‚unsigned int‚ from ‚double‚
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c gui.cpp -o gui.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c init.cpp -o init.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c osxgui.cpp -o osxgui.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c osxlib.cpp -o osxlib.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c par3d.cpp -o par3d.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c pixmap.cpp -o pixmap.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c render.cpp -o render.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c rglmath.cpp -o rglmath.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c rglview.cpp -o rglview.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c scene.cpp -o scene.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c select.cpp -o select.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c win32gui.cpp -o win32gui.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c win32lib.cpp -o win32lib.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c x11gui.cpp -o x11gui.o
> g++ -I/usr/local/lib64/R/include -DHAVE_PNG_H -I/usr/include/libpng12
> -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -Iext
> -I/usr/local/include -g -O2 -fpic -g -O2 -c x11lib.cpp -o x11lib.o
> g++ -shared -L/usr/local/lib64 -o rgl.so BBoxDeco.o Background.o Color.o
> Disposable.o Light.o LineSet.o LineStripSet.o Material.o PointSet.o
> PrimitiveSet.o QuadSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o
> SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o
> assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o
> glErrors.o glgui.o gui.o init.o osxgui.o osxlib.o par3d.o pixmap.o render.o
> rglmath.o rglview.o scene.o select.o win32gui.o win32lib.o x11gui.o x11lib.o
> -lGLU -lGL -L/usr/lib64 -lpng12 -lX11 -lfreetype
> installing to /usr/local/lib64/R/library/rgl/libs
> ** R
> ** demo
> ** inst
> ** preparing package for lazy loading
> ** help
> *** installing help indices
> ** building package indices ...
> ** testing if installed package can be loaded
> *** caught segfault ***
> address (nil), cause 'memory not mapped'
> aborting ...
> sh: line 1: 23732 Segmentation fault '/usr/local/lib64/R/bin/R'
> --no-save --slave< /tmp/RtmpkvIjOb/file6d97876
> ERROR: loading failed
> * removing ‚/usr/local/lib64/R/library/rgl‚
> The downloaded packages are in
> ‚/tmp/Rtmp5OaGuQ/downloaded_packages‚
> Updating HTML index of packages in '.Library'
> Making packages.html ... done
> Warning message:
> In install.packages("rgl") :
> installation of package 'rgl' had non-zero exit status
>
> [[alternative HTML version deleted]]
>
>
>
>
> ______________________________________________
> R-help_at_r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.



R-help_at_r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Mon 23 May 2011 - 18:41:31 GMT

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