Re: [R] network package in R

From: Weiwei Shi <helprhelp_at_gmail.com>
Date: Sat, 28 May 2011 11:51:34 -0500

Thank you, Steve.

Initially I tried to choose b/w cytoscape and pajek, among other bunch of software. I did not realize the existence of RCytoscape; otherwise, I would probably use that one.

Weiwei

On Sat, May 28, 2011 at 9:25 AM, Steve Lianoglou < mailinglist.honeypot_at_gmail.com> wrote:

> Hi,
>
> On Fri, May 27, 2011 at 5:32 PM, Weiwei Shi <helprhelp@gmail.com> wrote:
> > Hi there,
> >
> > I need a network builder and it can change the node size and color; I am
> not
> > sure if network package in R can do this or not. The other functions I
> > wanted have been found in that package.
> >
> > BTW, if there is another package in R relating to this, please suggest
> too.
>
> I'm not actually sure what you're looking for, but from trying to
> piece together the other emails in this thread maybe you are looking
> for a way to control graph/network layout in some GUI form?
>
> There is a bioconductor package called RCytoscape that can "drive"
> cytoscape from R, allowing you to draw a network you have loaded up in
> your R session and tweak different properties of nodes, edges, etc:
>
> http://www.bioconductor.org/packages/release/bioc/html/RCytoscape.html
>
> Maybe it can help you? I'm not sure if this is what you're asking for,
> though, so I could be way off the mark.
>
>
> HTH,
> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
> | Memorial Sloan-Kettering Cancer Center
> | Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>

-- 
Weiwei Shi, Ph.D
Research Scientist


"Did you always know?"
"No, I did not. But I believed..."
---Matrix III

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