Re: [Rd] Using a function from splines.c in our package

From: Gordon K Smyth <smyth_at_wehi.EDU.AU>
Date: Tue, 10 Jul 2012 15:26:29 +1000 (AUS Eastern Standard Time)

Thanks. Our package has LGPL (>= 2) licence, so we'll copy with header and proper acknowledgements.


On Mon, 9 Jul 2012, Prof Brian Ripley wrote:

> On Mon, 9 Jul 2012, Gordon K Smyth wrote:
>> Dear all,
>> I'm writing to ask for advice as to best practice. A PhD student working
>> with me is writing C++ code that we hope to make public as src code in our
>> Bioconductor package edgeR. He wants to call the function fmm_spline,
>> which is part of the source code for the stats package
>> from his C++ code. This function isn't one of the entry points for C code
>> documented in Chapter 6 of the "Writing R extensions" manual.
> None of those are in a package.
>> We haven't figured out a way to call the fmm_spline function directly from
>> our C++ code. Is there a way that we have missed?
> Not a very portable way, but there are some ideas in 'Writing R Extensions'.
> I don't think they are enough for a CRAN or BioC package, though.
>> Can we simply copy the fmm_spline function into our C++ code and declare
>> where we got it from? Should we include the license declaration from the
>> header of splines.c? Anything else we need to do satisfying copyright and
>> be good citizens?
> If your package has a compatible licence, you can (and you must include the
> whole header when you copy). CRAN's policies say that when you copy code
> from elsewhere you must include that code's authors in the Authors field of
> your package, and that clearly is good practice.
>> Thanks a lot
>> Gordon
>> ---------------------------------------------
>> Professor Gordon K Smyth,
>> Bioinformatics Division,
>> Walter and Eliza Hall Institute of Medical Research,
>> 1G Royal Parade, Parkville, Vic 3052, Australia.
>> Tel: (03) 9345 2326, Fax (03) 9347 0852,
> --
> Brian D. Ripley,
> Professor of Applied Statistics,
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595

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