[Rd] Error 1 : undefined first referenced symbol

From: Steiner, Julien <Julien.Steiner_at_imd.ch>
Date: Wed 29 Nov 2006 - 15:26:30 GMT


I'm having trouble building R under Unix. I've searched for information about it on google or the R database but I didn't find any answer on my problem. I would be thankful if somebody could help me working that out.  

The version of R I'm trying to build is R-2.4.0 and the architecture of solaris is sparc.  

Here's what I type.  


export PATH

That's for the C compiler  

./configure LDFLAGS="-L/opt/sfw/lib:/opt/sfw/lib/sparcv9"  

Then I get :  

Source directory: .

  Installation directory: /usr/local  

  C compiler:                gcc  -g -O2 -std=gnu99

  Fortran 77 compiler:       g77  -g -O2


  C++ compiler:              g++  -g -O2

  Fortran 90/95 compiler: g77 -g -O2  

  Interfaces supported: X11

  External libraries: readline

  Additional capabilities: PNG, JPEG, NLS

  Options enabled: shared BLAS, R profiling  

  Recommended packages: yes  

configure: WARNING: you cannot build DVI versions of the R manuals

configure: WARNING: you cannot build PDF versions of the R manuals  


and then I get this error message  

gmake[3]: Entering directory


gcc -L/opt/sfw/lib:/opt/sfw/lib/sparcv9 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o mkdtemp.o ../unix/libunix.a ./appl/libappl.a ../nmath/libnmath.a -L../../lib


-L/usr/ccs/bin -L/opt/sfw/lib -lg2c -lm -lgcc_s ./extra/zlib/libz.a
../extra/bzip2/libbz2.a ./extra/pcre/libpcre.a ../extra/intl/libintl.a
-lreadline -lncurses -lnsl -lsocket -ldl -lm

Undefined                       first referenced

 symbol                             in file

__builtin_isnan                     arithmetic.o

ld: fatal: Symbol referencing errors. No output written to R.bin

collect2: ld returned 1 exit status

gmake[3]: *** [R.bin] Error 1

gmake[3]: Leaving directory


gmake[2]: *** [R] Error 2

gmake[2]: Leaving directory


gmake[1]: *** [R] Error 1

gmake[1]: Leaving directory `/usr/local/R_HOME/R-2.4.0/src'

gmake: *** [R] Error 1    

In advance, thanks a lot if you mind helping me.    


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