[R] justRMA

From: Michael Gormley <mpg33_at_drexel.edu>
Date: Tue 19 Sep 2006 - 22:17:31 GMT


I am trying to preprocess a large dataset of affymetrix data. Creating an affybatch is not possible with the computer I am running it on, so I have used the justRMA command to run RMA. I have read the affy document describing the justRMA command and the help documentation but I am unclear as to whether this command uses median polish after normalization. I assume this is the case but would like to be sure before proceeding. Could someone clear up this confusion?

Thanks,
Mike

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