[R] 'weaver' package problem

From: Michael Kubovy <kubovy_at_virginia.edu>
Date: Sun 08 Oct 2006 - 16:31:28 GMT


Hi Seth,

The possibility of caching computations would be a great boon when one is iteratively refining a paper; so I'm most grateful for your work on this. Unfortunately I have a problem to report:

******************installing******************

> source("http://bioconductor.org/biocLite.R")
> biocLite("weaver")

Running getBioC version 0.1.8 with R version 2.4.0 Running biocinstall version 1.9.8 with R version 2.4.0 Your version of R requires version 1.9 of Bioconductor. trying URL 'http://bioconductor.org/packages/1.9/bioc/bin/macosx/ universal/contrib/2.4/weaver_1.0.0.tgz'
Content type 'application/x-gzip' length 101153 bytes opened URL

downloaded 98Kb

The downloaded packages are in

        /tmp/RtmpO6uHHW/downloaded_packages

******************loading weaver******************

> library(weaver)
Loading required package: digest
Loading required package: tools
Loading required package: codetools

******************testing Sweave******************

> testfile <- system.file("Sweave", "Sweave-test-1.Rnw", package =
"utils")
>
> ## enforce par(ask=FALSE)
> options(par.ask.default=FALSE)

>
> ## create a LaTeX file
> Sweave(testfile)

Writing to file Sweave-test-1.tex
Processing code chunks ...
1 : print term verbatim
2 : term hide
3 : echo print term verbatim
4 : term verbatim
5 : echo term verbatim
6 : echo term verbatim eps pdf
7 : echo term verbatim eps pdf

You can now run LaTeX on 'Sweave-test-1.tex'

******************testing weaver******************

> weaver(testfile)

Error in weaver(testfile) : unused argument(s) ("/Library/Frameworks/ R.framework/Resources/library/utils/Sweave/Sweave-test-1.Rnw")
******************session info******************
R version 2.4.0 (2006-10-03)
powerpc-apple-darwin8.7.0

locale:
C

attached base packages:

[1] "tools"     "grid"      "splines"   "datasets"  "methods"    
"stats"     "graphics"  "grDevices"
[9] "utils"     "base"

other attached packages:
     weaver  codetools     digest    effects      Hmisc       
chron     xtable    geepack     glmmML
    "1.0.0"    "0.0-3"    "0.2.2"    "1.0-9"    "3.1-1"    "2.3-8"     
"1.3-2"   "1.0-10"   "0.65-3"
       nlme       lme4     Matrix    lattice       MASS         
JGR     iplots     JavaGD      rJava
   "3.1-77" "0.9975-1" "0.9975-2"   "0.14-9"   "7.2-29"   "1.4-11"     
"1.0-4" "0.3-5" "0.4-10"

Professor Michael Kubovy
University of Virginia
Department of Psychology
USPS:     P.O.Box 400400    Charlottesville, VA 22904-4400
Parcels:    Room 102        Gilmer Hall
         McCormick Road    Charlottesville, VA 22903
Office:    B011    +1-434-982-4729
Lab:        B019    +1-434-982-4751
Fax:        +1-434-982-4766

WWW: http://www.people.virginia.edu/~mk9y/

R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Mon Oct 09 02:36:08 2006

Archive maintained by Robert King, hosted by the discipline of statistics at the University of Newcastle, Australia.
Archive generated by hypermail 2.1.8, at Sun 08 Oct 2006 - 17:30:09 GMT.

Mailing list information is available at https://stat.ethz.ch/mailman/listinfo/r-help. Please read the posting guide before posting to the list.