Re: [R] maximum likelihood estimation of 5 parameters

From: francogrex <francogrex_at_mail.com>
Date: Fri 05 Jan 2007 - 22:00:51 GMT

No I have not forgotten to use a negative fnscale to optimize, so as you suggest I will post some parts of the code I am running to show you the errors:

> n

 [1] 3 1 4 54 6 58 20 14 3 14 4 65 1 7 9 10 2 4 66
[20] 5 9 7 12 7 55 105 2 5 10 55 5 28 1 1 6 2 1 30
[39] 6 49 7 21 8 7
> e

 [1] 21.763201  1.209070  4.836270 32.644798 19.546600 24.584400 30.226700
 [8]  6.045340 14.010100  3.113350 21.015100 12.583100 15.826200 19.458401
[15]  3.891690  1.329970  0.241814  3.143580 13.057900  0.725441 18.136000
[22]  2.187660  6.319900  1.701510 29.654900 36.460999  7.292190  1.215370
[29]  3.209070 19.995001 11.972300  3.455920  0.138539  0.113350  1.360200
[36]  1.889170  1.518890 18.226700  4.050380 27.340099  1.181360 16.370300
[43] 20.589399 25.314899

> fr<-function(a1,b1,a2,b2,p){

+ 
+ w<-((gamma(a1+n)))/((gamma(a1)*factorial(n))*(1+(e/b1)^a1)*(1+(b1/e)^n))
+ z<-((gamma(a2+n)))/((gamma(a2)*factorial(n))*(1+(e/b2)^a2)*(1+(b2/e)^n))
+ 
+ sum (log( (p*w)+ ((1-p)*z) ))
+ 
+ }

>
> mle((fr),
> start=list(a1=0.2,b1=0.1,a2=2,b2=4,p=0.33),method="BFGS",control=list(fnscale=-1))
Error in optim(start, f, method = method, hessian = TRUE, ...) :

        non-finite finite-difference value [2]

And with the L-BFGS-B:

Error in optim(start, f, method = method, hessian = TRUE, ...) :

        L-BFGS-B needs finite values of 'fn'

AND WITH NELDER-MEAD it doesn't work either (same error), but when I change intial parameters (though I shouldn't, it gives something very weird (negatives or sometimes huge values).

Call:
mle(minuslogl = (fr), start = list(a1 = 1, b1 = 1, a2 = 10, b2 = 10,

    p = 0.9), method = "Nelder-Mead", control = list(fnscale = -1))

Coefficients:

        a1 b1 a2 b2 p -2.5035823 0.6236359 26.5562988 12.9604112 -0.1383767

Thanks

Ravi Varadhan wrote:
>
> Franco,
> Is it possible that you have failed to provide the negative of
> loglikelihood
> to "optim", since optim, by default, minimizes a function? If you want to
> do this withput redefining the log-likelihood, you should set fnscale= -1
> (as hinted by Prof. Ripley). This would turn the problem into a
> maximization problem.
>
> If this doesn't work, you should provide more details (a reproducible code
> with actual error message).
>
> Ravi.
>
> ----------------------------------------------------------------------------
> -------
>
> Ravi Varadhan, Ph.D.
>
> Assistant Professor, The Center on Aging and Health
>
> Division of Geriatric Medicine and Gerontology
>
> Johns Hopkins University
>
> Ph: (410) 502-2619
>
> Fax: (410) 614-9625
>
> Email: rvaradhan@jhmi.edu
>
> Webpage: http://www.jhsph.edu/agingandhealth/People/Faculty/Varadhan.html
>
>
>
> ----------------------------------------------------------------------------
> --------
>
> -----Original Message-----
> From: r-help-bounces@stat.math.ethz.ch
> [mailto:r-help-bounces@stat.math.ethz.ch] On Behalf Of francogrex
> Sent: Friday, January 05, 2007 10:42 AM
> To: r-help@stat.math.ethz.ch
> Subject: Re: [R] maximum likelihood estimation of 5 parameters
>
>
>
> Franco,
> You can provide lower and upper bounds on the parameters if you use optim
> with method="L-BFGS-B".
> Hth, Ingmar
>
> Thanks, but when I use L-BFGS-B it tells me that there is an error in
> optim(start, f, method = method, hessian = TRUE, ...) : L-BFGS-B needs
> finite values of 'fn'
>
> --
> View this message in context:
> http://www.nabble.com/maximum-likelihood-estimation-of-5-parameters-tf292536
> 4.html#a8180120
> Sent from the R help mailing list archive at Nabble.com.
>
> ______________________________________________
> R-help@stat.math.ethz.ch mailing list
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> PLEASE do read the posting guide
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>
> ______________________________________________
> R-help@stat.math.ethz.ch mailing list
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> PLEASE do read the posting guide
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>
>

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Received on Sat Jan 06 11:28:22 2007

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