Re: [R] labels outliers in boxplot

From: talepanda <talepanda_at_gmail.com>
Date: Sat 13 Jan 2007 - 07:06:50 GMT

you can get them from return value, try:

out.id<-identify(tb_ncs$Slide,tb_ncs$y)
out.block<-tb_ncs[out.id,]$Block

On 1/12/07, antoniababe@yahoo.se <antoniababe@yahoo.se> wrote:
> Dear talepande,
>
> Thanks for your suggestion,
> I have already tried to use it, but the identify
> function gave me only the observation number
> everytime I clicked on any point.What I want is
> instead of obervation numbers it would be block and/or
> slide numbers.
>
> Any other idea how I can make it works ?
>
> Thanks
> --- talepanda <talepanda@gmail.com> skrev:
>
> > because given data is a part of your data, I cannot
> > examine,
> > however, try:
> >
> > ##out.block<-identify(tb_ncs$y,tb_ncs$Slide)
> > out.block<-identify(tb_ncs$Slide,tb_ncs$y)
> >
> >
> > On 1/11/07, antoniababe@yahoo.se
> > <antoniababe@yahoo.se> wrote:
> > > Dear R-users,
> > >
> > > Following is part of my data, where slide has 36
> > > levels and block 48 levels. I have done boxplot
> > for
> > > each slide on the same graph. There are outliers
> > for
> > > each slide and I tried to use indentify functtion
> > to
> > > identify outliers in such a way that when I click
> > on
> > > an outlier or point, the points will be labelled
> > by
> > > either their block or ID or by both but without
> > > success. How can I make it work or are there other
> > > ways to do it than using identify function?
> > >
> > >
> > > Thanks in advance,
> > >
> > >
> > >
> > > dat1[1:10,]
> > > y Slide Block ID Control
> > > 1 0.03147823 1 1 IgG-human 5
> > > 2 -0.23815974 1 1 LPPAANDVSVLTAAR 0
> > > 3 -0.71926359 1 1 HTKHYRVVSKPAALV 0
> > > 4 -0.14607826 1 1 FVALPAATADAYATT 0
> > > 5 0.89553073 1 1 NYPAMMAHAGDMAGY 0
> > > 6 -0.67587100 1 1 RRALRQIGVLERPVG 0
> > > 7 0.32636034 1 1 DCGTIRVGSFRGRWL 0
> > > 8 -1.44057259 1 1 MAKLSTDELLDAFKE 0
> > > 9 -0.37064338 1 1 LELSDFVKKFEETFE 0
> > > 10 -0.20387233 1 1 VSRRAKVDVLIVHTT 0
> > >
> > >
> > > tb_ncs<-subset(dat1,dat1$Control==1) ### this
> > > data contains only negative controls
> > >
> > > par(las=2,mar=c(10.1,4.1,4.1,2.1))
> > >
> > > boxplot(split(tb_ncs$y,tb_ncs$Slide),col="orange",
> > > cex=.65,
> > > outline=TRUE,main="Negative
> > control
> > > response of each patient", cex.main=1,
> > font.main=1,
> > > col.main="blue",
> > > names=c(1:35,"B"))
> > > grid(nx=NA, ny=NULL)
> > > ### grid over boxplot
> > > legend("bottomright", "B = Buffer +
> > > sec",text.col="blue")
> > >
> > >
> > > out.block<-
> > > identify(tb_ncs$y,tb_ncs$Slide)
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> >
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> > > and provide commented, minimal, self-contained,
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> > >
> >
>
>
>
>
>
>
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https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Sat Jan 13 18:10:41 2007

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