# Re: [R] comparing two matrices

From: Dimitris Rizopoulos <Dimitris.Rizopoulos_at_med.kuleuven.be>
Date: Sun 21 Jan 2007 - 10:04:48 GMT

mat1 <- data.matrix(expand.grid(0:2, 0:2, 0:2)) mat2 <- mat1[c(19, 16, 13, 24, 8), ]
############
ind1 <- apply(mat1, 1, paste, collapse = "/")
ind2 <- apply(mat2, 1, paste, collapse = "/") match(ind2, ind1)

I hope it helps.

Best,
Dimitris

> Hello Marc and Dimitris,
>
> There was an error in my first example (therefore not reproducible), so
> mat1 <- expand.grid(0:2, 0:2, 0:2)
> mat2 <- mat1[c(19, 16, 13, 24, 8), ]
>
> Your solution works if and only if the elements in both matrices are unique.
> Unfortunately, it does not apply for my matrices where elements do repeat
> (only the rows are unique).
>
>> which(apply(matrix(mat1 %in% mat2, dim(mat1)), 1, all))
> integer(0)
>
>> which((mat1 %in% mat2)[1:nrow(mat1)])
> integer(0)
>
>
> Another solution would be using base 3 operations:
> mat1 <- expand.grid(0:2, 0:2, 0:2)[, 3:1]
> mat2 <- mat1[c(19, 16, 13, 24, 8), ]
>
> mylines <- mat2[, 1]
> for (i in 2:ncol(mat2)) {mylines <- 3*mylines + mat2[, i]}
> mylines + 1
> [1] 19 16 13 24 8
>
>
> I was still hoping for a direct matrix function to avoid the for() loop.
> Thanks,
>
>
> On Sunday 21 January 2007 01:06, Marc Schwartz wrote:
>> On Sun, 2007-01-21 at 00:14 +0200, Adrian Dusa wrote:
>> > Dear helpeRs,
>> >
>> > I have two matrices:
>> > mat1 <- expand.grid(0:2, 0:2, 0:2)
>> > mat2 <- aa[c(19, 16, 13, 24, 8), ]
>> >
>> > where mat2 is always a subset of mat1
>> >
>> > I need to find the corersponding row numbers in mat1 for each row in
>> > mat2. For this I have the following code:
>> >
>> > apply(mat2, 1, function(x) {
>> > which(apply(mat1, 1, function(y) {
>> > sum(x == y)
>> > }) == ncol(mat1))
>> > })
>> >
>> > The code is vectorized, but I wonder if there is a simpler (hence faster)
>> > matrix computation that I miss.
>> >
>> > Thank you,
>>
>> I have not fully tested this, but how about:
>>
>> mat1 <- matrix(1:20, ncol = 4, byrow = TRUE)
>> mat2 <- matrix(1:60, ncol = 4, byrow = TRUE)
>> mat2 <- mat2[sample(15), ]
>>
>> > mat1
>>
>> [,1] [,2] [,3] [,4]
>> [1,] 1 2 3 4
>> [2,] 5 6 7 8
>> [3,] 9 10 11 12
>> [4,] 13 14 15 16
>> [5,] 17 18 19 20
>>
>> > mat2
>>
>> [,1] [,2] [,3] [,4]
>> [1,] 13 14 15 16
>> [2,] 5 6 7 8
>> [3,] 41 42 43 44
>> [4,] 17 18 19 20
>> [5,] 21 22 23 24
>> [6,] 25 26 27 28
>> [7,] 53 54 55 56
>> [8,] 9 10 11 12
>> [9,] 57 58 59 60
>> [10,] 33 34 35 36
>> [11,] 49 50 51 52
>> [12,] 45 46 47 48
>> [13,] 1 2 3 4
>> [14,] 29 30 31 32
>> [15,] 37 38 39 40
>>
>> > which(apply(matrix(mat2 %in% mat1, dim(mat2)), 1, all))
>>
>> [1] 1 2 4 8 13
>>
>>
>> HTH,
>>
>> Marc Schwartz
>
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