Re: [R] Form of the equation produced by a GLM with Poisson family and log link function

From: Prof Brian Ripley <ripley_at_stats.ox.ac.uk>
Date: Sat 27 Jan 2007 - 07:28:05 GMT

Have you looked at the references on ?glm ? They will all explain this to you (the first and last are simpler than the other two).

The short answer is that predictions from the linear part of your model are for the natural log of the mean response. That is the default option for predict() on a glm fit, but there is also predict(fit, type="response") which predicts mean response. The Poisson family is an assumption you have supplied about how the response counts vary about the mean, that they are Poisson and independent with a mwan predicted by the model (for the 'true' coefficients).

These are statistical (and not 'math') issues.

On Fri, 26 Jan 2007, Marianne Gilbert wrote:

> Hi everyone,
>
> My background is not math and I am trying to figure out exactly what
> equation to use to map a response variable in GIS based on the
> coefficients obtained from the GLM and the values of the independent
> variables in each grid cell of my study area. Most specifically, I want
> to know how to incorporate the Poisson family and log link function in
> the equation. I would really appreciate if someone could help me with
> this or direct me towards literature that would help me do this.
>
> Here are the coefficients from my model:
>
> Call: glm(formula = count ~ slope + sst + chl + dist + ice, family = poisson, data = dfo2003cc)
>
> Coefficients:
> (Intercept) slope sst chl dist ice
> -6.884e-01 -6.740e-01 5.644e-01 -2.694e+00 -7.278e-05 1.044e-01
> Degrees of Freedom: 412 Total (i.e. Null); 407 Residual
> Null Deviance: 544.7
> Residual Deviance: 413.2 AIC: 512.2
>
> Thanks in advance!
>
>
> Marianne Gilbert, M.Sc., R.P.Bio.
> Environmental Scientist - Marine Biology
> Jacques Whitford
> 4370 Dominion St., 5th Floor
> Burnaby, B.C.
> V5G 4L7, Canada
> Tel. (604) 436-3014, ext. 253
> Fax. (604) 436-3752
>
> *****************************************************
>
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-- 
Brian D. Ripley,                  ripley@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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Received on Sat Jan 27 18:36:01 2007

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