Re: [R] installing Rgraphviz under fedora 5

From: Michael Lawrence <lawremi_at_iastate.edu>
Date: Wed, 13 Jun 2007 07:24:28 -0500

On 6/13/07, marco.R.help marco.R.help <marco.r.help_at_gmail.com> wrote:
>
> Dear list,
>
> I have a lot of troubles installing Rgraphviz.
> I installed graphviz 2.13 from "graphviz-2.13.20061222.0540.tar"
> I installed the library Rgraphviz
>
> > getBioC("Rgraphviz")
> Running biocinstall version 2.0.8 with R version 2.5.0
> Your version of R requires version 2.0 of Bioconductor.
> trying URL '
>
> http://bioconductor.org/packages/2.0/bioc/src/contrib/Rgraphviz_1.14.0.tar.gz
> '
> Content type 'application/x-gzip' length 1522949 bytes
>
> etc etc....
>
> but when I do: library(Rgraphviz)
>
> > library(Rgraphviz)
> Error in dyn.load(x, as.logical(local), as.logical(now)) :
> unable to load shared library '/home/jke/mazu/SOFTWARE_INST/R-
> 2.5.0
> /library/Rgraphviz/libs/Rgraphviz.so':
> libgvc.so.3: cannot open shared object file: No such file or directory
> Error : .onLoad failed in 'loadNamespace' for 'Rgraphviz'
> Error: package/namespace load failed for 'Rgraphviz'
>
> The path to Rgraphviz.so is correct !

But it's libgvc.so.3 that's missing. Make sure your LD_LIBRARY_PATH environment variable points to the directory containing it.

Can someone help with this?
>
> this is the session info ....
>
>
> regards
>
> Marco
>
>
> > sessioninfo()
> Error: could not find function "sessioninfo"
> > sessionInfo()
> R version 2.5.0 (2007-04-23)
> x86_64-unknown-linux-gnu
> locale:
>
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] "tools" "stats" "graphics" "grDevices" "datasets" "utils"
> [7] "methods" "base"
>
> other attached packages:
> geneplotter lattice annotate Biobase graph
> "1.14.0" "0.15-4" "1.14.1" "1.14.0" "1.14.2"
>
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>
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> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

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https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Wed 13 Jun 2007 - 12:41:14 GMT

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