Re: [R] Help With Sweave:

From: Dirk Eddelbuettel <edd_at_debian.org>
Date: Tue, 19 Jun 2007 21:44:06 -0500

Matt,

On 19 June 2007 at 21:23, M. Jankowski wrote:
| Hi All,
|
| I am running Ubuntu Feisty (7.04) on a Thinkpad T41. I've installed
| the nowebm package for Ubuntu. Working from this HowTo:
| http://www.ci.tuwien.ac.at/~leisch/Sweave/example-1.Snw
| I try to compile the example *.Snw as in the Sweave manual:
|
| mdj_at_lapmdj:~/Desktop/Sweave/example1$ noweb example-1.Snw
| Can't open output file
|
| Despite the error, a *.tex file is produced. Now I am stuck because I
| cannot seem to get the CTAN noweb package correctly installed for my
| Latex installation. I guess I am somewhat spoiled by the Synaptic
| package manager. Here is the result of my best attempt to get the
| noweb package installed:

i) No external noweb package is needed ii) Synaptic is not used to install CRAN / CTAN packages iii) Everything should be provided by r-base-core and tetex-extra.

Since relatively recently, a 'Sweave' command has been added. So simply do

	$ R CMD Sweave example-1.Snw 
	$ pdflatex example-1.tex
	$ kpdf example-1.pdf		# or xpdf, or gv, or ...

| A bunch of errors. What am I doing wrong? Any help is much
| appreciated!

You simply make your life too complicated when Debian and Ubuntu make it easier for you :)

| Of course, if there is a better place for me to ask this question
| please let me know where! Thanks!

The r-sig-debian list is appropriate for problems with Debian / Ubuntu.

Dirk

PS I usually use simple shell wrappers like this one. Others prefer Makefile.

edd_at_basebud:~> cat /home/edd/bin/sweave
#!/bin/bash -e

function errorexit () {

    echo "Error: $1"
    exit 1
}

function filetest () {

    if [ ! -f $1 ]; then

       errorexit "File $1 not found"
    fi
    return 0
}

if [ "$#" -lt 1 ]; then

    errorexit "Need to specify argument file" fi

BASENAME=$(basename $1 .Rnw)

RNWFILE=$BASENAME.Rnw
filetest $RNWFILE
echo "library(tools); Sweave(\"$RNWFILE\")" \

      | R --no-save --no-restore --slave

LATEXFILE=$BASENAME.tex
filetest $LATEXFILE && pdflatex $LATEXFILE

PDFFILE=$BASENAME.pdf

#filetest $PDFFILE && acroread $PDFFILE &
#filetest $PDFFILE && xpdf $PDFFILE &
filetest $PDFFILE && kpdf $PDFFILE &


-- 
Hell, there are no rules here - we're trying to accomplish something. 
                                                  -- Thomas A. Edison

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Received on Wed 20 Jun 2007 - 02:49:46 GMT

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