Re: [R] Re : Half of a heatmap

From: Gavin Kelly <gavinpaulkelly_at_gmail.com>
Date: Mon, 25 Jun 2007 17:24:22 +0100


 > I am trying to produce a heatmap of pairwise correlations, but since the matrix is
> symmetric, I only need either the upper or the lower triangle. I have scoured the
> web and R documentation, but I have not been able to find a way to produce such a
> figure. Is there a simple way to produce a heat map with only the part above or
> below the diagonal?

Can you not just set the lower or upper triangle to NAs, and pass this on to heatmap - or am I misunderstanding you?

tmp <- matrix(rnorm(100),10,10)
tmp[lower.tri(tmp)] <- NA
heatmap(tmp, Rowv=NA, Colv=NA)

Regards - Gavin

--
Gavin Kelly
Senior Statistician, Bioinformatics & Biostatistics Group
Cancer Research UK

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Received on Mon 25 Jun 2007 - 16:37:44 GMT

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