Re: [R] R 2.6 and library(survival)

From: Ben Bolker <bolker_at_ufl.edu>
Date: Sat, 24 Nov 2007 19:52:45 -0800 (PST)

makis motakis-2 wrote:
>
> Hi all,
>
> I have installed in R 2.6 the survival package and I am trying to analyze
> some
> data and present plots. The problem occurs when I try to plot lines on
> the same plot. E.g. take simulated data for time (t), event (e) and groups
> (group1 and group2) and do:
>
> ### this is how I create the plots
> plot1<-survfit(Surv(t,e)~ as.factor(group1))
> plot2<-survfit(Surv(t,e)~ as.factor(group2))
>
> plot(plot1)
> lines(plot2,type="s")
> Error in rep(2, n2 - 1) : invalid 'times' argument
>
> The plot is created (plot1) but the lines (plot2) are not. I have run this
> same program
> several times from my previous pc (R 2.4 was installed)and I never had
> such a problem.
> Now suddenly this error message appears and it concerns only the survival
> package (I mean
> for simple plots there is no problem to plot lines in an existing plot).
> Is there a problem
> with R 2.6 on this matter? Can someone please help?
>
>

Don't know ... a simple reproducible example would help ...

(Some really really trivial things I tried worked, for example:

z = rexp(100)

f1 = factor(rep(1:5,each=20))
f2 = factor(rep(1:2,each=50))
event = rep(1,100)

library(survival)
s1 = survfit(Surv(z,event)~f1)
s2 = survfit(Surv(z,event)~f2)
plot(s1)
lines(s2,col=2,type="s")

> sessionInfo()

R version 2.6.0 (2007-10-03)
i486-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:

[1] splines   stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] survival_2.34

  Ben Bolker

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