Re: [R] Install RSPerl in Leopard

From: Prof Brian Ripley <ripley_at_stats.ox.ac.uk>
Date: Mon, 14 Jan 2008 16:50:08 +0000 (GMT)

This is not the most appropriate list. But the first answer is that the package is not aware of sub-architectures, introduced a while back in R.

The best thing is to follow the posting guide and contact the author: if that fails, people on R-sig-mac might be able to walk you through the changes needed. It perhaps is as simple as editing RSPerl/src/RinPerlMakefile.in to say

include $(R_HOME)/etc$(R_ARCH)/Makeconf

That should fix the first problem. But

> cc1: error: invalid option ?arch=nocona?

suggests there might be a further problem (for which use R-sig-mac).

On Mon, 14 Jan 2008, David Ochoa wrote:

> Hi,
>
> I am having problems installing RSPerl 0.92-1 in my Mac OSX 10.5.1.
> Ive installed correctly R-2.6.1 with the .mpkg.
> I run the next command: <R CMD INSTALL --configure-args=' --with-in-
> perl ' RSPerl>
> And the next error message appears:
>
>
>
> RSPerl
> * Installing to library '/Library/Frameworks/R.framework/Resources/
> library'
> * Installing *source* package 'RSPerl' ...
> checking for perl... /usr/bin/perl
> No support for any of the Perl modules from calling Perl from R.
> *****************************************************
>
> Set PERL5LIB to /Library/Frameworks/R.framework/Resources/
> library/RSPerl/perl
>
> *****************************************************
> Testing: -F/Library/Frameworks/R.framework/.. -framework R
> Using '/usr/bin/perl' as the perl executable
> Perl modules (no):
> Adding R package to list of Perl modules to enable callbacks to R from
> Perl
> Creating the C code for dynamically loading modules with native code
> for Perl: R
> modules: R; linking:
> checking for gcc... gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> Support R in Perl: yes
> configure: creating ./config.status
> config.status: creating src/Makevars
> config.status: creating inst/scripts/RSPerl.csh
> config.status: creating inst/scripts/RSPerl.bsh
> config.status: creating src/RinPerlMakefile
> config.status: creating src/Makefile.PL
> config.status: creating cleanup
> config.status: creating src/R.pm
> config.status: creating R/perl5lib.R
> making target all in RinPerlMakefile
> RinPerlMakefile:5: /Library/Frameworks/R.framework/Resources/etc/
> Makeconf: No such file or directory
> make: *** No rule to make target `/Library/Frameworks/R.framework/
> Resources/etc/Makeconf'. Stop.
> calling make -f Makefile.perl install
> make: Makefile.perl: No such file or directory
> make: *** No rule to make target `Makefile.perl'. Stop.
> chmod: blib/lib/R.pm: No such file or directory
> Finished configuration
> ** libs
> ** arch - i386
> gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-
> version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/
> R.framework/Resources/include -I/Library/Frameworks/R.framework/
> Resources/include/i386 -I. -arch i386 -arch ppc -g -pipe -fno-common -
> DPERL_DARWIN -no-cpp-precomp -fno-strict-aliasing -Wdeclaration-after-
> statement -I/usr/local/include -I/System/Library/Perl/5.8.8/darwin-
> thread-multi-2level/CORE -DPERL_POLLUTE -D_R_=1 -DUSE_R=1 -
> DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1 -msse3 -fPIC -g -O2 -
> march=nocona -c Converters.c -o Converters.o
> cc1: error: invalid option ?arch=nocona?
> lipo: can't open input file: /var/folders/qc/qcR--kvAHYGoOkmr3ZNtvk++
> +TM/-Tmp-//cclHWEBN.out (No such file or directory)
> make: *** [Converters.o] Error 1
> chmod: /Library/Frameworks/R.framework/Resources/library/RSPerl/libs/
> i386/*: No such file or directory
> ERROR: compilation failed for package 'RSPerl'
> ** Removing '/Library/Frameworks/R.framework/Resources/library/RSPerl'
>
>
>
>
> Have I will changed any enviroment variable?
> Can anybody help me?
> Thanks
>
>
>
> David
>
> ______________________________________________
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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>

-- 
Brian D. Ripley,                  ripley_at_stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

______________________________________________ R-help_at_r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

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