Re: [R] Installing one channel GUI

From: Prof Brian Ripley <ripley_at_stats.ox.ac.uk>
Date: Wed, 16 Jan 2008 12:44:29 +0000 (GMT)

On Wed, 16 Jan 2008, Schraga Schwartz wrote:

> Hello,
>
> I'm trying to install oneChannelGui on my computer. For this purpose, I've
> tried to carefully follow the manual, and done the following:
>
> 1. I've installed the Affy power tools
> 2. I've installed TCL from
> http://www.activestate.com/Products/ActiveTcl/ (by following the link at the
> right side of the page, and installing activeTCL8.5.0.0)

So this is a Windows computer. You need Tcl/Tk 8.4.x, not 8.5.0 (which is later than the current R release), and you need to read the rw-FAQ (which is on the Rgui Help menu) Q4.6 and set the variables it tells you about (or compile R from the sources yourself after configuring it to use 8.5.x).

BTW, the message is wrong: R comes with complete Tcl/Tk libraries, just not all third-party addons.

I am Cc:ing the package maintainer to ask him to correct this.

> Nonetheless, when I try running the oneChannelGUI I get an error message
> starting off like this:
>
> Cannot find Tcl/Tk package "BWidget". affylmGUI cannot continue.
>
> affylmGUI requires the Tcl/Tk extensions, BWidget and Tktable.
>
> You must have Tcl/Tk installed on your computer, not just the minimal
> Tcl/Tk installation which comes with R (for Windows). If you
> do have
> Tcl/Tk installed, including the extensions (e.g. using the ActiveTcl
> distribution in Windows), make sure that R can find the path to the
> Tcl library, e.g. C:\Tcl\lib (on Windows) or /usr/lib (on Linux/Unix)
> or /sw/lib on Mac OSX.
>
> This error message contains a reference to a FAQ for windows users (like
> myself): http://www.stats.ox.ac.uk/pub/R/rw-FAQ.html. However, this webpage
> does not come up.

So please will the package author fix the (long-outdated) reference. The canonical URL is

http://cran.r-project.org/bin/windows/base/rw-FAQ.html

but it may be better to link to

http://cran.r-project.org/faqs.html

> I have looked in the directory in which I installed TCL, and indeed I
> couldn't find any Bwidget and Tktable files; however, I don't know how to
> get them and haven't been able to find them on the web; moreover, I'm not
> sure how to set the path in R to recognize them.
>
> I'd be very grateful for any help,
>
> Thank you very much,
>
> Schraga Schwartz
>
> Department of Human Molecular Genetics and Biochemistry,
> Tel Aviv University Medical School,
> Tel Aviv 69978, Israel.
> Tel: +972-3-640 6894
>
> email: schragas_at_post.tau.ac.il
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

-- 
Brian D. Ripley,                  ripley_at_stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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Received on Wed 16 Jan 2008 - 13:03:15 GMT

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