[R] compiling 2.6.2 using icc

From: Denham Robert <Robert.Denham_at_nrw.qld.gov.au>
Date: Wed, 13 Feb 2008 13:04:15 +1000


I am having trouble compiling R-2.6.2 on suse linux x86_64 using the intel compiler. I read section C.2.1 Intel compilers in the R Installation and Administration manual, and put

CC=icc
CFLAGS="-g -O3 -wd188 -ip"
F77=ifort
FFLAGS="-g -O3"
ICC_LIBS=/opt/intel/cce/10.1.012/lib
IFC_LIBS=/opt/intel/fce/10.1.012/lib/
LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/lib64" CXX=icpc
CXXFLAGS="-g -O3"
FC=ifort
FCFLAGS="-g -O3 -mp"

in my config.site. Everything seems to compile alright, up until making the recommended package MASS. The output below shows that it is using gcc rather than icc when compiling the package, and the CFLAGS wd188 and ip . How do I get it to use icc for both building R and building the packages?

Robert

......
make[2]: Entering directory
`/opt/freewaresrc/R/R-2.6.2/src/library/Recommended' begin installing recommended package VR
* Installing *source* package 'MASS' ...
** libs

make[3]: Entering directory `/tmp/R.INSTALL.Z28650/VR/MASS/src' gcc -I/opt/freewaresrc/R/R-2.6.2/include
-I/opt/freewaresrc/R/R-2.6.2/include -I/usr/local/include -mp -fpic -g -O3 -wd188 -ip -c lqs.c -o lqs.o

gcc: unrecognized option '-wd188'
cc1: error: unrecognized command line option "-ip"
cc1: error: unrecognized command line option "-mp"
make[3]: *** [lqs.o] Error 1
make[3]: Leaving directory `/tmp/R.INSTALL.Z28650/VR/MASS/src' ERROR: compilation failed for package 'MASS'
** Removing '/opt/freewaresrc/R/R-2.6.2/library/MASS'

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