[R] Save a group of matrix

From: Alfonso Pérez Rodríguez <fonsilei_at_iim.csic.es>
Date: Thu, 21 Feb 2008 16:58:41 +0100

It seems that is not posible to send R file in the messages, well, then I resend the message with the script included.

Hello, I'm creating a loop to work with vegan, to get a species abundance curve. Here I send the script I've created and also an excel file to prove what it can do.
Well, I have a database with 20 years, and each year we have sampled 19 stratum, and in each estratum we have carry out some sumpling. Then, with the script that I've sent I've got to calculate the species abundance curve for each stratum but only for one year. I want to be able to do this for the 20 years sampled but separately, obtaining one independent matrix for each year, but I don't know how to do, I sure it's very simple but I've not encountered the way to do it.

If someone can help me I would be very grateful, thank you

SCRIPT library(reshape)
library(vegan)
Input="D:/R/Analisis aprendizaje/Input"
setwd(Input)
Data=read.table("PruebasRNA3.csv",header=T,sep=";",dec=".")

Estr=unique(Data$ESTRATO)
LEstr=length(Estr)

Results= matrix(nrow=20, ncol=LEstr)
Results[is.na(Results)]=0

for(i in 1:LEstr)
  {
  Datasel=Data[Data$ESTRATO==Estr[i],]
  SubData=data.frame(Datasel$PESCA, Datasel$Sp, Datasel$Numero)   TransData <- reshape(SubData, v.names="Datasel.Numero", idvar="Datasel.PESCA",

                       timevar="Datasel.Sp", direction="wide")

  TransData[is.na(TransData)] <- 0
  SAC=specaccum(TransData,"random",permutations=100)   # str(SAC), a través de esta función veo cual es la estructura de mis datos y puedo pedir las columnas que me interesen, que en este caso serían de la 3 a la 5 (sites, richness y sd)   Pesc=length(SAC$richness)
    for (j in 1:Pesc)

        {
        Results[j,i]=SAC$richness[j]
        }

  }
Results
write.table(Results,file="D:/R/Analisis aprendizaje/Output/Results.txt")

Alfonso Pérez Rodríguez
Instituto de Investigaciones Marinas
C/ Eduardo Cabello nº 6
C.P. 36208 Vigo (España)
Tlf.- 986231930 Extensión 241
e-mail: fonsilei_at_iim.csic.es

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R-help_at_r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Thu 21 Feb 2008 - 20:01:24 GMT