Re: [R] Parallel R for dummies (on hpc)

From: Markus Schmidberger <schmidb_at_ibe.med.uni-muenchen.de>
Date: Tue, 26 Feb 2008 08:04:38 +0100

Hi Tim,

I think you should have a look at this Rmpi Tutorial http://ace.acadiau.ca/math/ACMMaC/Rmpi/

and to Luke Tierney's webpage:
http://www.cs.uiowa.edu/~luke/R/cluster/uiowasnow.html

Best,
Markus

Tim Smith schrieb:
> Hi,
>
> I had access to an hpc cluster, and wanted to parallelize some of my R code. I looked at the snow,nws, rscalapack documentation but was unable to make out how I should submit my job to the hpc, and how I should code a simple program. For example, if I had 10 matrices, and 10 processor how should I write the R (and the hpc submit code) so that I run the calculations (e.g. rowsums) for each matrix in a different processor?
>
> Are there any simple examples on how to go about doing this?
>
> many thanks!
>
>
>
>
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-- 
Dipl.-Tech. Math. Markus Schmidberger

Ludwig-Maximilians-Universität München
IBE - Institut für medizinische Informationsverarbeitung,
Biometrie und Epidemiologie
Marchioninistr. 15, D-81377 Muenchen
URL: http://ibe.web.med.uni-muenchen.de 
Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de
Tel: +49 (089) 7095 - 4599

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Received on Tue 26 Feb 2008 - 07:15:49 GMT

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