Re: [R] RSQLite error

From: Gavin Simpson <gavin.simpson_at_ucl.ac.uk>
Date: Fri, 29 Feb 2008 15:44:33 +0000

Paul,

Do you have the RSQLite package installed?

In a clean R, what does

require(RSQLite)

return?

If you don't have it installed, then install the package:

install.package("RSQLite", dep = TRUE)

If that proceeds correctly - you may need external libraries of headers for RSQLite to compile against, try to load the genefilter package again and see if this has rectified the problem.

HTH G

On Fri, 2008-02-29 at 16:04 +0100, Paul Hammer wrote:
> hi members,
>
> i try to load the package genefilter but i get always this error message:
>
> _R code:_
> >library(genefilter)
> Error in dyn.load(file, ...) :
> unable to load shared library
> '/usr/local/lib64/R/library/RSQLite/libs/RSQLite.so':
> /usr/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined symbol:
> sqlite3_column_text
> Error: package/namespace load failed for 'genefilter'
> >library(RSQLite)
> Error in dyn.load(file, ...) :
> unable to load shared library
> '/usr/local/lib64/R/library/RSQLite/libs/RSQLite.so':
> /usr/local/lib64/R/library/RSQLite/libs/RSQLite.so: undefined symbol:
> sqlite3_column_text
> Error: package/namespace load failed for 'RSQLite'
>
> -------------------------------------------------------------------
>
> the file RSQLite.so exists and has all rights. i use fedora 7 with 64
> bit technology.
>
> any suggestions?
>
> thanks
> paul
>
> > sessionInfo()
> R version 2.6.2 (2008-02-08)
> x86_64-unknown-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] splines tools stats graphics grDevices utils datasets
> [8] methods base
>
> other attached packages:
> [1] survival_2.34 Biobase_1.16.3 DBI_0.2-4
>
> loaded via a namespace (and not attached):
> [1] rcompgen_0.1-17
>
> [[alternative HTML version deleted]]
>
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 Dr. Gavin Simpson             [t] +44 (0)20 7679 0522
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Received on Fri 29 Feb 2008 - 15:50:05 GMT

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