[R] vertex labels in igraph from adjacency matrix

From: Mark W Kimpel <mwkimpel_at_gmail.com>
Date: Wed, 05 Mar 2008 01:39:41 -0500

I am getting some unexpected results from some functions of igraph and it is possible that I am misinterpreting the vertex numbers. Eg., the max betweenness measure seems to be from a vertex that is not connected to a single other vertex. Below if my code snippet:

my.graph <- graph.adjacency(adjmatrix = my.adj.matrix, mode=c("undirected"))

most.between.vert <- colnames(my.adj.matrix)[which(betweenness(graph = my.graph, v=V(my.graph), directed = FALSE) == max(betweenness(graph = my.graph, v=V(my.graph), directed = FALSE))) + 1]

sum(my.adj.matrix[most.between.vertext,]) 0

Is there a way to automatically set the vertex name attributes from the row and colnames of the inputted adjacency matrix to graph.adjacency? This would seem like an intuitive feature, but I can't find it documented. In the absence of this feature, how can I make sure that I am setting the vertex name attributes correctly?


Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

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Received on Wed 05 Mar 2008 - 06:44:36 GMT

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