Re: [R] Trouble with R CMD check

From: Duncan Murdoch <murdoch_at_stats.uwo.ca>
Date: Fri, 07 Mar 2008 14:06:05 -0500

On 3/7/2008 1:53 PM, Shewcraft, Ryan wrote:

> Thanks!  That's seemed to partially work, but now when I try to load it
> in R I get:
> 
> library(polsplineRS)
> Error in library.dynam("polspline", pkg, lib) : 
>         shared library 'polspline' not found
> Error in library(polsplineRS) : .First.lib failed for 'polsplineRS' 

Apparently you have renamed the package, but missed renaming it in the code in .First.lib.

Duncan Murdoch

> 
> -----Original Message-----
> From: Duncan Murdoch [mailto:murdoch_at_stats.uwo.ca] 
> Sent: Friday, March 07, 2008 1:36 PM
> To: Shewcraft, Ryan
> Cc: r-help_at_r-project.org
> Subject: Re: [R] Trouble with R CMD check
> 
> On 3/7/2008 1:21 PM, Shewcraft, Ryan wrote:

>> Friends,
>>
>> I changed one line of a package at the source level and then rebuilt
> it.

>> When I run R CMD check, I get an error:
> 
> You're getting lots of warnings from the compiler; presumably those have
> nothing to do with you.  Then at the end you're getting an error because
> you haven't set up your R toolset completely:
> 
> hhc: not found
> 
> This is the Microsoft Help Workshop help compiler.  Either you didn't
> install it, or didn't put it in the right place.  But you can avoid the
> error by just not building compiled help, using
> 
> Rcmd install --docs=normal polsplineRS
> 
> Duncan Murdoch
> 
> 

>>
>> installing R.css in C:/polsplineRS.Rcheck
>>
>>
>> ---------- Making package polsplineRS ------------
>> adding build stamp to DESCRIPTION
>> making DLL ...
>> making hareall.d from hareall.c
>> making heftall.d from heftall.c
>> making lsdall.d from lsdall.c
>> making lspecall.d from lspecall.c
>> making nlsd.d from nlsd.c
>> making polyall.d from polyall.c
>> making polymars.d from polymars.c
>> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
>> hareall.c -o hareall.o
>> hareall.c: In function `gremdim':
>> hareall.c:2127: warning: unused variable `x'
>> hareall.c: In function `compall':
>> hareall.c:1656: warning: 'lala' might be used uninitialized in this
>> function
>> hareall.c: In function `newton':
>> hareall.c:1876: warning: 'rall' might be used uninitialized in this
>> function
>> hareall.c: In function `search':
>> hareall.c:646: warning: 'iloc' might be used uninitialized in this
>> function
>> hareall.c:646: warning: 'lloc' might be used uninitialized in this
>> function
>> hareall.c:646: warning: 'uloc' might be used uninitialized in this
>> function
>> hareall.c: In function `adders':
>> hareall.c:529: warning: 'crit1' might be used uninitialized in this
>> function
>> hareall.c: In function `share':
>> hareall.c:2126: warning: 'bb1' might be used uninitialized in this
>> function
>> hareall.c:2126: warning: 'bt1' might be used uninitialized in this
>> function
>> hareall.c:2126: warning: 'bb2' might be used uninitialized in this
>> function
>> hareall.c:2126: warning: 'bw' might be used uninitialized in this
>> function
>> hareall.c:2127: warning: 'wald' might be used uninitialized in this
>> function
>> hareall.c: In function `sphare':
>> hareall.c:3417: warning: 's' might be used uninitialized in this
>> function
>> hareall.c: At top level:
>> hareall.c:132: warning: 'iigvector' declared `static' but never
> defined

>> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
>> heftall.c -o heftall.o
>> heftall.c: In function `sheft':
>> heftall.c:301: warning: 'nintx' might be used uninitialized in this
>> function
>> heftall.c:301: warning: 'addi' might be used uninitialized in this
>> function
>> heftall.c:1848: warning: 'loloc' might be used uninitialized in this
>> function
>> heftall.c:1848: warning: 'uploc' might be used uninitialized in this
>> function
>> heftall.c:1848: warning: 'nowloc1' might be used uninitialized in this
> 

>> function
>> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
>> lsdall.c -o lsdall.o
>> lsdall.c: In function `knotplace':
>> lsdall.c:1890: warning: 'ia' might be used uninitialized in this
>> function
>> lsdall.c:1895: warning: 'u3' might be used uninitialized in this
>> function
>> lsdall.c:1895: warning: 'u4' might be used uninitialized in this
>> function
>> lsdall.c: In function `liter':
>> lsdall.c:369: warning: 'zerror' might be used uninitialized in this
>> function
>> lsdall.c:370: warning: 'newlikelihood' might be used uninitialized in
>> this function
>> lsdall.c: In function `logcensor':
>> lsdall.c:51: warning: 'xnknots' might be used uninitialized in this
>> function
>> lsdall.c:55: warning: 'xczheta' might be used uninitialized in this
>> function
>> lsdall.c: In function `pqlsd':
>> lsdall.c:2908: warning: 'j' might be used uninitialized in this
>> function
>> lsdall.c: At top level:
>> lsdall.c:1458: warning: 'fun2' defined but not used
>> lsdall.c:1471: warning: 'fun48' defined but not used
>> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
>> lspecall.c -o lspecall.o
>> lspecall.c: In function `tsadd':
>> lspecall.c:626: warning: 'b2' might be used uninitialized in this
>> function
>> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
> nlsd.c

>> -o nlsd.o
>> nlsd.c: In function `ludcmp':
>> nlsd.c:695: warning: 'imax' might be used uninitialized in this
>> function
>> nlsd.c: In function `setupspace':
>> nlsd.c:1717: warning: 'm' might be used uninitialized in this function
>> nlsd.c: In function `startspace':
>> nlsd.c:1838: warning: 'l' might be used uninitialized in this function
>> nlsd.c: In function `pompall':
>> nlsd.c:1158: warning: 'f' might be used uninitialized in this function
>> nlsd.c: In function `nlsd':
>> nlsd.c:747: warning: 'nowloc1' might be used uninitialized in this
>> function
>> nlsd.c:747: warning: 'loloc' might be used uninitialized in this
>> function
>> nlsd.c:747: warning: 'uploc' might be used uninitialized in this
>> function
>> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
>> polyall.c -o polyall.o
>> polyall.c: In function `poly':
>> polyall.c:3121: warning: 'okd' might be used uninitialized in this
>> function
>> polyall.c:2777: warning: 'aj' might be used uninitialized in this
>> function
>> polyall.c:2777: warning: 'ak' might be used uninitialized in this
>> function
>> polyall.c:2777: warning: 'sj' might be used uninitialized in this
>> function
>> polyall.c:2777: warning: 'sk' might be used uninitialized in this
>> function
>> polyall.c:2777: warning: 'bbi' might be used uninitialized in this
>> function
>> polyall.c:2777: warning: 'bbj' might be used uninitialized in this
>> function
>> polyall.c:2777: warning: 'bbk' might be used uninitialized in this
>> function
>> polyall.c:2778: warning: 'baj' might be used uninitialized in this
>> function
>> polyall.c:2778: warning: 'bak' might be used uninitialized in this
>> function
>> polyall.c:2778: warning: 'bsj' might be used uninitialized in this
>> function
>> polyall.c:2778: warning: 'bsk' might be used uninitialized in this
>> function
>> polyall.c:395: warning: 'iloc' might be used uninitialized in this
>> function
>> polyall.c:395: warning: 'lloc' might be used uninitialized in this
>> function
>> polyall.c:395: warning: 'uloc' might be used uninitialized in this
>> function
>> polyall.c: In function `proj':
>> polyall.c:1794: warning: 'k' might be used uninitialized in this
>> function
>> polyall.c:1794: warning: 'k0' might be used uninitialized in this
>> function
>> polyall.c:1794: warning: 'k1' might be used uninitialized in this
>> function
>> polyall.c:1794: warning: 'k2' might be used uninitialized in this
>> function
>> polyall.c:1794: warning: 'k3' might be used uninitialized in this
>> function
>> polyall.c:1794: warning: 'k4' might be used uninitialized in this
>> function
>> polyall.c:1794: warning: 'k5' might be used uninitialized in this
>> function
>> polyall.c:1794: warning: 'k6' might be used uninitialized in this
>> function
>> polyall.c: In function `spoly':
>> polyall.c:945: warning: 'numbers' might be used uninitialized in this
>> function
>> polyall.c:946: warning: 'ranges' might be used uninitialized in this
>> function
>> polyall.c:948: warning: 'tdata' might be used uninitialized in this
>> function
>> polyall.c:948: warning: 'zdata' might be used uninitialized in this
>> function
>> polyall.c:949: warning: 'loss' might be used uninitialized in this
>> function
>> polyall.c:1575: warning: 'bestl' might be used uninitialized in this
>> function
>> polyall.c:1575: warning: 'bestu' might be used uninitialized in this
>> function
>> gcc -Ic:/PROGRA~1/R/R-24~1.1/include -Wall -O2 -std=gnu99 -c
>> polymars.c -o polymars.o
>> polymars.c: In function `fit_model':
>> polymars.c:513: warning: unused variable `intercept_sd'
>> polymars.c: In function `find_best_candidate':
>> polymars.c:1361: warning: unused variable `dok1'
>> polymars.c:1361: warning: unused variable `dok2'
>> polymars.c: In function `initial_model':
>> polymars.c:2585: warning: unused variable `mesh_index'
>> polymars.c: In function `lsame':
>> polymars.c:3925: warning: suggest parentheses around && within ||
>> polymars.c:3926: warning: suggest parentheses around && within ||
>> polymars.c:3929: warning: suggest parentheses around && within ||
>> polymars.c:3930: warning: suggest parentheses around && within ||
>> polymars.c: In function `dspmv':
>> polymars.c:4963: warning: suggest parentheses around && within ||
>> polymars.c: In function `condition':
>> polymars.c:6566: warning: unused variable `tt'
>> polymars.c: In function `fit_as_candidate':
>> polymars.c:1046: warning: 'knot1_value' might be used uninitialized in
> 

>> this function
>> polymars.c:1046: warning: 'knot2_value' might be used uninitialized in
> 

>> this function
>> polymars.c: In function `find_best_candidate':
>> polymars.c:1686: warning: 'current_predictor_values2' might be used
>> uninitialized in this function
>> polymars.c:1686: warning: 'knot1_value' might be used uninitialized in
> 

>> this function
>> polymars.c:1686: warning: 'knot2_value' might be used uninitialized in
> 

>> this function
>> polymars.c: In function `fit_model':
>> polymars.c:2164: warning: 'trailing_column' might be used
>> uninitialized in this function
>> polymars.c:2586: warning: 'knot_1_value' might be used uninitialized
>> in this function
>> polymars.c:2586: warning: 'knot_2_value' might be used uninitialized
>> in this function
>> polymars.c:2591: warning: 'means' might be used uninitialized in this
>> function
>> polymars.c:2591: warning: 'SDs' might be used uninitialized in this
>> function
>> polymars.c: In function `polymars':
>> polymars.c:358: warning: 'mesh' might be used uninitialized in this
>> function
>> polymars.c:6318: warning: 'mesh' might be used uninitialized in this
>> function
>> polymars.c:6318: warning: 'mesh' might be used uninitialized in this
>> function
>> g77 -O2 -Wall -c allpack.f -o allpack.o
>> allpack.f: In subroutine `xdsidi':
>> In file included from allpack.f:0:
>> allpack.f:476: warning: 'ten' might be used uninitialized in this
>> function windres --include-dir c:/PROGRA~1/R/R-24~1.1/include -i
>> polsplineRS_res.rc -o polsplineRS_res.o gcc -shared -s -o
>> polsplineRS.dll polsplineRS.def hareall.o heftall.o lsdall.o
>> lspecall.o nlsd.o polyall.o polymars.o allpack.o polsplineRS_res.o
>> -Lc:/PROGRA~1/R/R-24~1.1/bin -Lc:/PROGRA~1/R/R-24~1.1/bin -lRblas
>> -lg2c -lg2c -lR
>> ... DLL made
>> installing DLL
>> installing R files
>> installing man source files
>> installing indices
>> installing help
>> >>> Building/Updating help pages for package 'polsplineRS'
>> Formats: text html latex example chm
>> beta.polyclass text html latex example
> chm

>> clspec text html latex example
> chm
>> cpolyclass text html latex example
> chm
>> design.polymars text html latex example
> chm
>> dhare text html latex example
> chm
>> dheft text html latex example
> chm
>> dlogspline text html latex example
> chm
>> doldlogspline text html latex example
> chm
>> hare text html latex example
> chm
>> heft text html latex example
> chm
>> logspline text html latex example
> chm
>> lspec text html latex example
> chm
>> oldlogspline text html latex example
> chm
>> persp.polymars text html latex
> chm
>> plot.hare text html latex example
> chm
>> plot.heft text html latex example
> chm
>> plot.logspline text html latex example
> chm
>> plot.lspec text html latex example
> chm
>> plot.oldlogspline text html latex example
> chm
>> plot.polyclass text html latex example
> chm
>> plot.polymars text html latex example
> chm
>> polyclass text html latex example
> chm
>> polymars text html latex example
> chm
>> predict.polymars text html latex example
> chm
>> summary.hare text html latex example
> chm
>> summary.heft text html latex example
> chm
>> summary.logspline text html latex example
> chm
>> summary.lspec text html latex example
> chm
>> summary.oldlogspline text html latex example
> chm
>> summary.polyclass text html latex example
> chm
>> summary.polymars text html latex example
> chm
>> testhare text html latex example
> chm
>> unstrip text html latex example
> chm
>> xhare text html latex
> chm

>> hhc: not found
>> cp: cannot stat
>> `C:/polsplineRS.Rcheck/00_pkg_src/polsplineRS/chm/polsplineRS.chm': No
> 

>> such file or directory
>> make[1]: *** [chm-polsplineRS] Error 1
>> make: *** [pkg-polsplineRS] Error 2
>> *** Installation of polsplineRS failed ***
>>
>> Removing 'C:/polsplineRS.Rcheck/polsplineRS'
>>
>> I am slowly figuring out all of this R stuff so I apologize for
>> continually bothering everyone.
>>
>> Thanks,
>>
>> Ryan Shewcraft
>> The Blackstone Group, L.P.
>>> 345 Park Avenue, 28th Floor
>>> New York, NY 10154
>>> P: 212-583-5147

>> F: 646-253-7633
>>
>> --------------------------------------------------------
>>
>> Please open the following attachment for important information
> regarding this e-mail communication.

>>
>>
>> ----------------------------------------------------------------------
>> --
>>
>> ______________________________________________
>> R-help_at_r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>

R-help_at_r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Fri 07 Mar 2008 - 19:20:45 GMT

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