Re: [R] NLS plinear question

From: Katharine Mullen <kate_at_few.vu.nl>
Date: Tue, 06 May 2008 23:18:35 +0200 (CEST)

recall that 0 ^{-.2} = 1/0^{.2}, and that dividing by 0 gives Inf. so when 0 is in trl, part of your model for RT is Inf:

> trl <- 0:14
> p <- -.2
> cbind(1,trl, trl^p)

        trl
 [1,] 1   0       Inf
 [2,] 1   1 1.0000000
 [3,] 1   2 0.8705506
 [4,] 1   3 0.8027416
 [5,] 1   4 0.7578583
 [6,] 1   5 0.7247797
 [7,] 1   6 0.6988271
 [8,] 1   7 0.6776109
 [9,] 1   8 0.6597540
[10,] 1   9 0.6443940
[11,] 1  10 0.6309573
[12,] 1  11 0.6190439
[13,] 1  12 0.6083643

[14,] 1 13 0.5987029
[15,] 1 14 0.5898946

On Tue, 6 May 2008, Rick DeShon wrote:

> Hi All.
>
> I've run into a problem with the plinear algorithm in nls that is confusing
> me.
>
> Assume the following reaction time data over 15 trials for a single unit.
> Trials are coded from 0-14 so that the intercept represents reaction time in
> the first trial.
>
> trl RT
> 0 1132.0
> 1 630.5
> 2 1371.5
> 3 704.0
> 4 488.5
> 5 575.5
> 6 613.0
> 7 824.5
> 8 509.0
> 9 791.0
> 10 492.5
> 11 515.5
> 12 467.0
> 13 556.5
> 14 456.0
>
> Now fit a power function to this data using nls with the plinear algorithm
> >fit.pw <-nls(RT ~ cbind(1,trl, trl^p), start = c(p = -.2), algorithm =
> "plinear", data=df.one)
>
> Yields the following error message....
> "Error in numericDeriv(form[[3]], names(ind), env) :
> Missing value or an infinity produced when evaluating the model"
>
> Now, recode trial from 1-15 and run the same model.
> >fit.pw <-nls(RT ~ cbind(1,trl, trl^p), start = c(p = -.2), algorithm =
> "plinear", data=df.one)
>
> Seems to work fine now...
> Nonlinear regression model
> model: RT ~ cbind(1, trl, trl^p)
> data: df.one
> p .lin1 .lin.trl .lin3
> -0.2845 200.3230 -8.9467 904.7582
> residual sum-of-squares: 555915
>
> Number of iterations to convergence: 11
>
> Any idea why having a zero for the first value of X causes this problem?
>
> Thanks in advance,
>
> Rick DeShon
>
> [[alternative HTML version deleted]]
>
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>



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https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. Received on Tue 06 May 2008 - 21:31:35 GMT

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